Markus Herrgard

Cited by

	All	Since 2016
Citations	10114	4780
h-index	41	36
i10-index	66	63

940

470

235

705

20042005200620072008200920102011201220132014201520162017201820192020202172 129 186 192 260 479 605 606 717 652 652 666 714 849 844 815 928 622

Public access

View all

34 articles

3 articles

available

not available

Based on funding mandates

Co-authors

Bernhard PalssonUCSDVerified email at eng.ucsd.edu
Adam FeistUCSD / DTUVerified email at ucsd.edu
Markus CovertStanford UniversityVerified email at stanford.edu
Daniel MachadoNorwegian University of Science and TechnologyVerified email at ntnu.no
Nikolaus SonnenscheinDTU BioengineeringVerified email at dtu.dk
Rebecca M LennenSenior Researcher, Novo Nordisk Foundation Center for Biosustainability, Technical University ofVerified email at biosustain.dtu.dk
Irina BorodinaThe Novo Nordisk Foundation Center for Biosustainability, Technical University of DenmarkVerified email at biosustain.dtu.dk
Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenVerified email at chalmers.se
William P. InskeepProfessor, Montana State UniversityVerified email at montana.edu
Douglas B RuschIndiana University BloomingtonVerified email at indiana.edu
Zackary J JayMontana State UniversityVerified email at montana.edu
Morten O A SommerProfessor, Technical University of DenmarkVerified email at bio.dtu.dk
Scott J HarrisonAffinity Biomarker LabsVerified email at affinitybiomarkerlabs.com
Konstantin SchneiderBASF SEVerified email at basf.com
Susannah TringeEnvironmental Genomics and Systems Biology, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Michael Krogh JensenGroup leader, Novo-Nordisk Foundation Center for BiosustainabilityVerified email at biosustain.dtu.dk
Christian LievenNovo Nordisk Foundation Center for BiosustainabilityVerified email at biosustain.dtu.dk
Eytan RuppinChief, Cancer Data Science Lab (CDSL), NCI/NIHVerified email at nih.gov
Tomer ShlomiAssociate Professor of Computer Science, TechnionVerified email at cs.technion.ac.il
Jay KeaslingProfessor of Chemical & Biomolecular Engineering and of Bioengineering, University of CaliforniaVerified email at lbl.gov

Markus Herrgard

CTO, BioInnovation Institute

Verified email at novo.dk - Homepage

Synthetic Biology Metabolic Engineering Systems Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Reconstruction of biochemical networks in microorganisms AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson Nature Reviews Microbiology 7 (2), 129-143, 2009	992	2009
Integrating high-throughput and computational data elucidates bacterial networks MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson Nature 429 (6987), 92-96, 2004	959	2004
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson, MJ Herrgard Nature protocols 2 (3), 727-738, 2007	936	2007
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model NC Duarte, MJ Herrgård, BØ Palsson Genome research 14 (7), 1298-1309, 2004	781	2004
Network-based prediction of human tissue-specific metabolism T Shlomi, MN Cabili, MJ Herrgård, BØ Palsson, E Ruppin Nature biotechnology 26 (9), 1003-1010, 2008	660	2008
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008	624	2008
Connecting extracellular metabolomic measurements to intracellular flux states in yeast ML Mo, BØ Palsson, MJ Herrgård BMC systems biology 3 (1), 1-17, 2009	472	2009
Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae T Jakočiūnas, I Bonde, M Herrgård, SJ Harrison, M Kristensen, ... Metabolic engineering 28, 213-222, 2015	340	2015
Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism D Machado, M Herrgård PLoS computational biology 10 (4), e1003580, 2014	338	2014
Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae MJ Herrgård, BS Lee, V Portnoy, BØ Palsson Genome research 16 (5), 627-635, 2006	271	2006
Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ... Metabolic engineering 12 (3), 173-186, 2010	251	2010
Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function WP Inskeep, DB Rusch, ZJ Jay, MJ Herrgard, MA Kozubal, ... PloS one 5 (3), e9773, 2010	194	2010
Reconstruction of microbial transcriptional regulatory networks MJ Herrgård, MW Covert, BØ Palsson Current opinion in biotechnology 15 (1), 70-77, 2004	186	2004
Reconciling gene expression data with known genome-scale regulatory network structures MJ Herrgård, MW Covert Genome research 13 (11), 2423-2434, 2003	153	2003
Establishing a synthetic pathway for high-level production of 3-hydroxypropionic acid in Saccharomyces cerevisiae via β-alanine I Borodina, KR Kildegaard, NB Jensen, TH Blicher, J Maury, S Sherstyk, ... Metabolic engineering 27, 57-64, 2015	148	2015
Methods and systems to identify operational reaction pathways BO Palsson, MW Covert, M Herrgard US Patent 7,734,420, 2010	143	2010
Identification of genome-scale metabolic network models using experimentally measured flux profiles MJ Herrgård, SS Fong, BØ Palsson PLoS computational biology 2 (7), e72, 2006	137	2006
Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations TE Sandberg, M Pedersen, RA LaCroix, A Ebrahim, M Bonde, ... Molecular biology and evolution 31 (10), 2647-2662, 2014	122	2014
The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem WP Inskeep, ZJ Jay, SG Tringe, M Herrgard, DB Rusch Frontiers in microbiology 4, 67, 2013	122	2013
Genome-Scale Analysis of the Uses of the Escherichia coli Genome: Model-Driven Analysis of Heterogeneous Data Sets TE Allen, MJ Herrgard, M Liu, Y Qiu, JD Glasner, FR Blattner, BØ Palsson Journal of bacteriology 185 (21), 6392-6399, 2003	118	2003

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow this author

Cited by

Co-authors