Georgios Fotakis
Georgios Fotakis
Institute of Bioinformatics, Medical University of Innsbruck
Verified email at
Cited by
Cited by
Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data
G Sturm, T Szabo, G Fotakis, M Haider, D Rieder, Z Trajanoski, F Finotello
Bioinformatics 36 (18), 4817-4818, 2020
High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer
S Salcher, G Sturm, L Horvath, G Untergasser, C Kuempers, G Fotakis, ...
Cancer cell 40 (12), 1503-1520. e8, 2022
Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer
I Heidegger, G Fotakis, A Offermann, J Goveia, S Daum, S Salcher, ...
Molecular Cancer 21 (1), 132, 2022
NeoFuse: predicting fusion neoantigens from RNA sequencing data
G Fotakis, D Rieder, M Haider, Z Trajanoski, F Finotello
Bioinformatics 36 (7), 2260-2261, 2020
Computational cancer neoantigen prediction: current status and recent advances
G Fotakis, Z Trajanoski, D Rieder
Immuno-Oncology and Technology 12, 100052, 2021
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
D Rieder, G Fotakis, M Ausserhofer, G Rene, W Paster, Z Trajanoski, ...
Bioinformatics 38 (4), 1131-1132, 2022
Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity
I Binenbaum, HAT Atamni, G Fotakis, G Kontogianni, T Koutsandreas, ...
BMC genomics 21, 1-13, 2020
Functional and spatial proteomics profiling reveals intra-and intercellular signaling crosstalk in colorectal cancer
C Plattner, G Lamberti, P Blattmann, A Kirchmair, D Rieder, Z Loncova, ...
Iscience 26 (12), 2023
Glucocorticoid treatment influences prostate cancer cell growth and the tumor microenvironment via altered glucocorticoid receptor signaling in prostate fibroblasts
A Eigentler, F Handle, S Schanung, A Degen, H Hackl, HHH Erb, ...
Oncogene 43 (4), 235-247, 2024
Comparative Analysis of Whole Transcriptome Single-Cell Sequencing Technologies in Complex Tissues
S Salcher, I Heidegger, G Untergasser, G Fotakis, A Scheiber, ...
bioRxiv, 2023.07. 03.547464, 2023
Comparative analysis of 10X chromium vs. BD rhapsody whole transcriptome single-cell sequencing technologies in complex human tissues
S Salcher, I Heidegger, G Untergasser, G Fotakis, A Scheiber, ...
Heliyon, 2024
Phenotypic plasticity, spatial niches and cancer-associated fibroblast/mural cell interactions define the human prostate cancer microenvironment
N Sampson, E Brunner, E Damisch, G Fotakis, Z Trajanoski, G Schäfer, ...
A novel calcium channel Cavβ2 splice variant with unique properties predominates in the retina
H Seitter, J Obkircher, P Grabher, J Hartl, L Zanetti, UT Lux, G Fotakis, ...
Journal of Biological Chemistry 299 (4), 2023
Perturbation of fibromuscular cell states is contingent with prostate disease pathophysiology
E Brunner, E Damisch, G Fotakis, Z Trajanoski, A Pircher, I Heidegger, ...
European Urology Open Science 44, S152, 2022
Functional heterogeneity of cancer-associated stromal subtypes in the prostate cancer microenvironment
E Damisch, E Brunner, S Sopper, I Heidegger, A Pircher, G Fotakis, ...
Cancer Research 82 (12_Supplement), 4013-4013, 2022
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