Molecular-crowding effects on single-molecule RNA folding/unfolding thermodynamics and kinetics NF Dupuis, ED Holmstrom, DJ Nesbitt Proceedings of the National Academy of Sciences 111 (23), 8464-8469, 2014 | 94 | 2014 |
Synthesis and applications of RNAs with position-selective labelling and mosaic composition Y Liu, E Holmstrom, J Zhang, P Yu, J Wang, MA Dyba, D Chen, J Ying, ... Nature 522 (7556), 368-372, 2015 | 70 | 2015 |
Single-molecule kinetics reveal cation-promoted DNA duplex formation through ordering of single-stranded helices NF Dupuis, ED Holmstrom, DJ Nesbitt Biophysical journal 105 (3), 756-766, 2013 | 63 | 2013 |
Entropic origin of Mg2+-facilitated RNA folding JL Fiore, ED Holmstrom, DJ Nesbitt Proceedings of the National Academy of Sciences 109 (8), 2902-2907, 2012 | 45 | 2012 |
Transition path times of coupled folding and binding reveal the formation of an encounter complex F Sturzenegger, F Zosel, ED Holmstrom, KJ Buholzer, DE Makarov, ... Nature communications 9 (1), 1-11, 2018 | 40 | 2018 |
Thermodynamic origins of monovalent facilitated RNA folding ED Holmstrom, JL Fiore, DJ Nesbitt Biochemistry 51 (18), 3732-3743, 2012 | 27 | 2012 |
Mechanistic insights into cofactor-dependent coupling of RNA folding and mRNA transcription/translation by a cobalamin riboswitch JT Polaski, ED Holmstrom, DJ Nesbitt, RT Batey Cell reports 15 (5), 1100-1110, 2016 | 26 | 2016 |
Single-molecule conformational dynamics of a biologically functional hydroxocobalamin riboswitch ED Holmstrom, JT Polaski, RT Batey, DJ Nesbitt Journal of the American Chemical Society 136 (48), 16832-16843, 2014 | 26 | 2014 |
Kinetic and thermodynamic origins of osmolyte-influenced nucleic acid folding ED Holmstrom, NF Dupuis, DJ Nesbitt The Journal of Physical Chemistry B 119 (9), 3687-3696, 2015 | 25 | 2015 |
Single-molecule fluorescence resonance energy transfer studies of the human telomerase RNA pseudoknot: temperature-/urea-dependent folding kinetics and thermodynamics ED Holmstrom, DJ Nesbitt The Journal of Physical Chemistry B 118 (14), 3853-3863, 2014 | 21 | 2014 |
The role of counterion valence and size in GAAA tetraloop–receptor docking/undocking kinetics JL Fiore, ED Holmstrom, LR Fiegland, JH Hodak, DJ Nesbitt Journal of molecular biology 423 (2), 198-216, 2012 | 21 | 2012 |
Accurate transfer efficiencies, distance distributions, and ensembles of unfolded and intrinsically disordered proteins from single-molecule FRET ED Holmstrom, A Holla, W Zheng, D Nettels, RB Best, B Schuler Methods in enzymology 611, 287-325, 2018 | 19 | 2018 |
Pulsed IR heating studies of single-molecule DNA duplex dissociation kinetics and thermodynamics ED Holmstrom, NF Dupuis, DJ Nesbitt Biophysical journal 106 (1), 220-231, 2014 | 18 | 2014 |
Real-Time Infrared Overtone Laser Control of Temperature in Picoliter H2O Samples: “Nanobathtubs” for Single Molecule Microscopy ED Holmstrom, DJ Nesbitt The journal of physical chemistry letters 1 (15), 2264-2268, 2010 | 17 | 2010 |
Disordered RNA chaperones can enhance nucleic acid folding via local charge screening ED Holmstrom, Z Liu, D Nettels, RB Best, B Schuler Nature communications 10 (1), 2453, 2019 | 15 | 2019 |
Biophysical insights from temperature-dependent single-molecule förster resonance energy transfer ED Holmstrom, DJ Nesbitt Annual review of physical chemistry 67, 441-465, 2016 | 15 | 2016 |
Conformational plasticity of hepatitis C virus core protein enables RNA-induced formation of nucleocapsid-like particles ED Holmstrom, D Nettels, B Schuler Journal of molecular biology 430 (16), 2453-2467, 2018 | 11 | 2018 |
Incorporation of isotopic, fluorescent, and heavy-atom-modified nucleotides into RNAs by position-selective labeling of RNA Y Liu, E Holmstrom, P Yu, K Tan, X Zuo, DJ Nesbitt, R Sousa, JR Stagno, ... Nature protocols 13 (5), 987, 2018 | 11 | 2018 |
Dispersion correction alleviates dye stacking of single-stranded DNA and RNA in simulations of single-molecule fluorescence experiments KK Grotz, MF Nueesch, ED Holmstrom, M Heinz, LS Stelzl, B Schuler, ... The Journal of Physical Chemistry B 122 (49), 11626-11639, 2018 | 6 | 2018 |
Tests of Kramers’ theory at the single-molecule level: Evidence for folding of an isolated RNA tertiary interaction at the viscous speed limit NF Dupuis, ED Holmstrom, DJ Nesbitt The Journal of Physical Chemistry B 122 (38), 8796-8804, 2018 | 5 | 2018 |