Erik Holmstrom
Erik Holmstrom
Verified email at ku.edu - Homepage
TitleCited byYear
Molecular-crowding effects on single-molecule RNA folding/unfolding thermodynamics and kinetics
NF Dupuis, ED Holmstrom, DJ Nesbitt
Proceedings of the National Academy of Sciences 111 (23), 8464-8469, 2014
712014
Synthesis and applications of RNAs with position-selective labelling and mosaic composition
Y Liu, E Holmstrom, J Zhang, P Yu, J Wang, MA Dyba, D Chen, J Ying, ...
Nature 522 (7556), 368, 2015
492015
Single-molecule kinetics reveal cation-promoted DNA duplex formation through ordering of single-stranded helices
NF Dupuis, ED Holmstrom, DJ Nesbitt
Biophysical journal 105 (3), 756-766, 2013
472013
Entropic origin of Mg2+-facilitated RNA folding
JL Fiore, ED Holmstrom, DJ Nesbitt
Proceedings of the National Academy of Sciences 109 (8), 2902-2907, 2012
402012
Thermodynamic origins of monovalent facilitated RNA folding
ED Holmstrom, JL Fiore, DJ Nesbitt
Biochemistry 51 (18), 3732-3743, 2012
222012
Single-molecule conformational dynamics of a biologically functional hydroxocobalamin riboswitch
ED Holmstrom, JT Polaski, RT Batey, DJ Nesbitt
Journal of the American Chemical Society 136 (48), 16832-16843, 2014
212014
Kinetic and thermodynamic origins of osmolyte-influenced nucleic acid folding
ED Holmstrom, NF Dupuis, DJ Nesbitt
The Journal of Physical Chemistry B 119 (9), 3687-3696, 2015
202015
Single-molecule fluorescence resonance energy transfer studies of the human telomerase RNA pseudoknot: temperature-/urea-dependent folding kinetics and thermodynamics
ED Holmstrom, DJ Nesbitt
The Journal of Physical Chemistry B 118 (14), 3853-3863, 2014
192014
The role of counterion valence and size in GAAA tetraloop–receptor docking/undocking kinetics
JL Fiore, ED Holmstrom, LR Fiegland, JH Hodak, DJ Nesbitt
Journal of molecular biology 423 (2), 198-216, 2012
192012
Mechanistic insights into cofactor-dependent coupling of RNA folding and mRNA transcription/translation by a cobalamin riboswitch
JT Polaski, ED Holmstrom, DJ Nesbitt, RT Batey
Cell reports 15 (5), 1100-1110, 2016
182016
Real-Time Infrared Overtone Laser Control of Temperature in Picoliter H2O Samples: “Nanobathtubs” for Single Molecule Microscopy
ED Holmstrom, DJ Nesbitt
The journal of physical chemistry letters 1 (15), 2264-2268, 2010
142010
Pulsed IR heating studies of single-molecule DNA duplex dissociation kinetics and thermodynamics
ED Holmstrom, NF Dupuis, DJ Nesbitt
Biophysical journal 106 (1), 220-231, 2014
132014
Biophysical insights from temperature-dependent single-molecule förster resonance energy transfer
ED Holmstrom, DJ Nesbitt
Annual review of physical chemistry 67, 441-465, 2016
102016
Transition path times of coupled folding and binding reveal the formation of an encounter complex
F Sturzenegger, F Zosel, ED Holmstrom, KJ Buholzer, DE Makarov, ...
Nature communications 9 (1), 4708, 2018
82018
Conformational plasticity of hepatitis C virus core protein enables RNA-induced formation of nucleocapsid-like particles
ED Holmstrom, D Nettels, B Schuler
Journal of molecular biology 430 (16), 2453-2467, 2018
42018
Incorporation of isotopic, fluorescent, and heavy-atom-modified nucleotides into RNAs by position-selective labeling of RNA
Y Liu, E Holmstrom, P Yu, K Tan, X Zuo, DJ Nesbitt, R Sousa, JR Stagno, ...
Nature protocols 13 (5), 987, 2018
42018
Tests of Kramers’ theory at the single-molecule level: evidence for folding of an isolated RNA tertiary interaction at the viscous speed limit
NF Dupuis, ED Holmstrom, DJ Nesbitt
The Journal of Physical Chemistry B 122 (38), 8796-8804, 2018
22018
Single-molecule FRET reveals three conformations for the TLS domain of brome mosaic virus genome
M Vieweger, ED Holmstrom, DJ Nesbitt
Biophysical journal 109 (12), 2625-2636, 2015
22015
Dispersion correction alleviates dye stacking of single-stranded DNA and RNA in simulations of single-molecule fluorescence experiments
KK Grotz, MF Nueesch, ED Holmstrom, M Heinz, LS Stelzl, B Schuler, ...
The Journal of Physical Chemistry B 122 (49), 11626-11639, 2018
12018
Accurate transfer efficiencies, distance distributions, and ensembles of unfolded and intrinsically disordered proteins from single-molecule FRET
ED Holmstrom, A Holla, W Zheng, D Nettels, RB Best, B Schuler
Methods Enzymol. 611, 287-325, 2018
12018
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Articles 1–20