Ignacio Arganda-Carreras
Ignacio Arganda-Carreras
Ikerbasque Associate Researcher at University of the Basque Country and DIPC
Verified email at ehu.eus - Homepage
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Year
Fiji: an open-source platform for biological-image analysis
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Nature Methods 9 (7), 676–682, 2012
310482012
BoneJ: free and extensible bone image analysis in ImageJ
M Doube, MM Kłosowski, I Arganda-Carreras, FP Cordelières, ...
Bone 47 (6), 1076-1079, 2010
18092010
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification
I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ...
Bioinformatics 33 (15), 2424-2426, 2017
10672017
TrakEM2 software for neural circuit reconstruction
A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ...
PloS one 7 (6), e38011, 2012
6782012
Serial two-photon tomography for automated ex vivo mouse brain imaging
T Ragan, LR Kadiri, KU Venkataraju, K Bahlmann, J Sutin, J Taranda, ...
Nature methods 9 (3), 255-258, 2012
4882012
MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ
D Legland, I Arganda-Carreras, P Andrey
Bioinformatics 32 (22), 3532-3534, 2016
4762016
3D reconstruction of histological sections: Application to mammary gland tissue
I Arganda‐Carreras, R Fernández‐González, A Muñoz‐Barrutia, ...
Microscopy research and technique 73 (11), 1019-1029, 2010
4472010
Consistent and elastic registration of histological sections using vector-spline regularization
I Arganda-Carreras, COS Sorzano, R Marabini, JM Carazo, ...
International Workshop on Computer Vision Approaches to Medical Image …, 2006
3002006
Crowdsourcing the creation of image segmentation algorithms for connectomics
I Arganda-Carreras, SC Turaga, DR Berger, D Cireşan, A Giusti, ...
Frontiers in neuroanatomy 9, 142, 2015
2542015
Mapping social behavior-induced brain activation at cellular resolution in the mouse
Y Kim, KU Venkataraju, K Pradhan, C Mende, J Taranda, SC Turaga, ...
Cell reports 10 (2), 292-305, 2015
2052015
Vision-Based Fall Detection with Convolutional Neural Networks
A Núñez-Marcos, G Azkune, I Arganda-Carreras
Wireless Communications and Mobile Computing 2017, 1-16, 2017
1152017
Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts
A Cardona, S Saalfeld, I Arganda-Carreras, W Pereanu, J Schindelin, ...
The Journal of Neuroscience 30 (22), 7538-7553, 2010
602010
Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling
N Miyasaka, I Arganda-Carreras, N Wakisaka, M Masuda, U Sümbül, ...
Nature communications 5 (1), 1-14, 2014
552014
A generic classification-based method for segmentation of nuclei in 3D images of early embryos
J Gul-Mohammed, I Arganda-Carreras, P Andrey, V Galy, T Boudier
BMC bioinformatics 15 (1), 1-12, 2014
392014
Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy
L Abdeladim, KS Matho, S Clavreul, P Mahou, JM Sintes, X Solinas, ...
Nature communications 10 (1), 1-14, 2019
372019
NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei
A Poulet, I Arganda-Carreras, D Legland, AV Probst, P Andrey, C Tatout
Bioinformatics 31 (7), 1144-1146, 2015
352015
Deep learning on chest x-ray images to detect and evaluate pneumonia cases at the era of covid-19
K Hammoudi, H Benhabiles, M Melkemi, F Dornaika, I Arganda-Carreras, ...
Journal of Medical Systems 45 (7), 1-10, 2021
332021
Phenotyping nematode feeding sites: three‐dimensional reconstruction and volumetric measurements of giant cells induced by root‐knot nematodes in Arabidopsis
J Cabrera, FE Díaz‐Manzano, M Barcala, I Arganda‐Carreras, ...
New Phytologist 206 (2), 868-880, 2015
292015
An optimized approach to perform bone histomorphometry
D Malhan, M Muelke, S Rosch, AB Schaefer, F Merboth, D Weisweiler, ...
Frontiers in endocrinology 9, 666, 2018
242018
Non-rigid consistent registration of 2D image sequences
I Arganda-Carreras, COS Sorzano, P Thévenaz, A Muñoz-Barrutia, ...
Physics in Medicine & Biology 55 (20), 6215, 2010
212010
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