Mariano Barbieri

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Mario NicodemiProfessor of Theoretical Physics, Università di Napoli "Federico II"Verified email at na.infn.it
Ana PomboProfessor Humboldt University and Berlin Institute for Medical Systems Biology, Max Delbrück CentreVerified email at mdc-berlin.de
James FraserDepartment of Biochemistry, McGill UniversityVerified email at mail.mcgill.ca
Josée DostieProfessor, McGill UniversityVerified email at mcgill.ca
Antonio ScialdonePrincipal Investigator, Helmholtz Zentrum München, Institute of Epigenetics and Stem CellsVerified email at helmholtz-muenchen.de
Ines de SantiagoCambridge Institute - CRUKVerified email at cruk.cam.ac.uk
Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Alistair ForrestHead of Systems Biology and Genomics, Harry Perkins Institute of Medical ResearchVerified email at perkins.uwa.edu.au
Colin SempleProfessor/Head of Bioinformatics, MRC Human Genetics Unit, University of EdinburghVerified email at ed.ac.uk
Tiago RitoThe Francis Crick InstituteVerified email at crick.ac.uk
Carmelo FerraiUMG, Goettingen, GermanyVerified email at med.uni-goettingen.de
Deborah Katia PallottiVerified email at unina.it

Mariano Barbieri

(MDC) Max Delbruck Center for Molecular Medicine, (INFN) Italian National Institute of Nuclear

No verified email - Homepage

Molecular biology bioinformatics financial risk assessment machine learning high performance computing


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Complex multi-enhancer contacts captured by genome architecture mapping RA Beagrie, A Scialdone, M Schueler, DCA Kraemer, M Chotalia, SQ Xie, ... Nature 543 (7646), 519-524, 2017	573	2017
Complexity of chromatin folding is captured by the strings and binders switch model M Barbieri, M Chotalia, J Fraser, LM Lavitas, J Dostie, A Pombo, ... Proceedings of the National Academy of Sciences 109 (40), 16173-16178, 2012	501	2012
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ... Molecular systems biology 11 (12), 852, 2015	331	2015
Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells M Barbieri, SQ Xie, E Torlai Triglia, AM Chiariello, S Bianco, I de Santiago, ... Nature structural & molecular biology 24 (6), 515-524, 2017	75	2017
A polymer model explains the complexity of large-scale chromatin folding M Barbieri, J Fraser, LM Lavitas, M Chotalia, J Dostie, A Pombo, ... Nucleus 4 (4), 267-273, 2013	34	2013
Conformation regulation of the X chromosome inactivation center: a model A Scialdone, I Cataudella, M Barbieri, A Prisco, M Nicodemi PLoS computational biology 7 (10), e1002229, 2011	30	2011
A model of the large-scale organization of chromatin M Barbieri, M Chotalia, J Fraser, LM Lavitas, J Dostie, A Pombo, ... Biochemical Society Transactions 41 (2), 508-512, 2013	21	2013
Polymer physics, scaling and heterogeneity in the spatial organisation of chromosomes in the cell nucleus M Barbieri, A Scialdone, A Gamba, A Pombo, M Nicodemi Soft Matter 9 (36), 8631-8635, 2013	19	2013
Consortium F, Semple CA, Dostie J, Pombo A, Nicodemi M. Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ... Mol Syst Biol 11 (12), 852, 2015	14	2015
Polymer models of chromatin organization M Barbieri, A Scialdone, A Piccolo, AM Chiariello, C di Lanno, A Prisco, ... Frontiers in genetics 4, 113, 2013	14	2013
Polymer models of the organization of chromosomes in the nucleus of cells AM Chiariello, S Bianco, A Piccolo, C Annunziatella, M Barbieri, A Pombo, ... Modern Physics Letters B 29 (09), 1530003, 2015	9	2015
Enhancer-promoter contact formation requires RNAPII and antagonizes loop extrusion S Zhang, N Uebelmesser, M Barbieri, A Papantonis bioRxiv, 2022.07. 04.498738, 2022	7	2022
Inference of chromosome 3D structures from GAM data by a physics computational approach L Fiorillo, S Bianco, AM Chiariello, M Barbieri, A Esposito, ... Methods 181, 70-79, 2020	7	2020
Mean-field theory of the symmetry breaking model for X chromosome inactivation A Scialdone, M Barbieri, D Pallotti, M Nicodemi Progress of Theoretical Physics Supplement 191, 40-45, 2011	4	2011
Multiwavelength Frequency Modulated CW Ladar: The Effect of Refractive Index M Barbieri, DK Pallotti, M Siciliani de Cumis, L Santamaria Amato Photonics 7 (4), 90, 2020	2	2020
A feasibility study for self-heterodyne earth satellite dual-comb spectroscopy L Santamaria, M Barbieri, D Pallotti, MS de Cumis Optical Sensors 2021 11772, 143-147, 2021	1	2021
Single photon detector for satellite Dual Comb Spectroscopy: a numerical study L Santamaria, M Barbieri, DK Pallotti, MS de Cumis 2021 IEEE 14th Workshop on Low Temperature Electronics (WOLTE), 1-3, 2021		2021
Polymer Models of the Chromosomes in the Nucleus of Cells AM Chiariello, S Bianco, A Piccolo, C Annunziatella, M Barbieri, A Pombo, ... High Performance Scientific Computing Using Distributed Infrastructures …, 2017		2017
Statistical Mechanics Models of Chromatin Architecture M Barbieri, M Nicodemi		2013
STATISTICAL MECHANICS AND MOLECULAR BIOLOGY Polymer models of chromatin 3D organization AM Chiariello, M Barbieri

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