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AD Schmitt, M Hu, I Jung, Z Xu, Y Qiu, CL Tan, Y Li, S Lin, Y Lin, CL Barr, ...
Cell reports 17 (8), 2042-2059, 2016
|Multi-platform discovery of haplotype-resolved structural variation in human genomes|
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1-16, 2019
|Integrative analysis of haplotype-resolved epigenomes across human tissues|
D Leung, I Jung, N Rajagopal, A Schmitt, S Selvaraj, AY Lee, CA Yen, ...
Nature 518 (7539), 350-354, 2015
|Epigenetic priming of enhancers predicts developmental competence of hESC-derived endodermal lineage intermediates|
A Wang, F Yue, Y Li, R Xie, T Harper, NA Patel, K Muth, J Palmer, Y Qiu, ...
Cell stem cell 16 (4), 386-399, 2015
|A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells|
Y Diao, R Fang, B Li, Z Meng, J Yu, Y Qiu, KC Lin, H Huang, T Liu, ...
Nature methods 14 (6), 629-635, 2017
|RAP2 mediates mechanoresponses of the Hippo pathway|
Z Meng, Y Qiu, KC Lin, A Kumar, JK Placone, C Fang, KC Wang, S Lu, ...
Nature 560 (7720), 655-660, 2018
|The Hippo pathway effector proteins YAP and TAZ have both distinct and overlapping functions in the cell|
SW Plouffe, KC Lin, JL Moore, FE Tan, S Ma, Z Ye, Y Qiu, B Ren, KL Guan
Journal of Biological Chemistry 293 (28), 11230-11240, 2018
|Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers|
J Yan, SAA Chen, A Local, T Liu, Y Qiu, KM Dorighi, S Preissl, CM Rivera, ...
Cell research 28 (2), 204-220, 2018
|Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells|
Y Zhang, T Li, S Preissl, ML Amaral, JD Grinstein, EN Farah, E Destici, ...
Nature genetics 51 (9), 1380-1388, 2019
|Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase|
L Patel, R Kang, SC Rosenberg, Y Qiu, R Raviram, S Chee, R Hu, B Ren, ...
Nature structural & molecular biology 26 (3), 164-174, 2019
|Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk|
WW Greenwald, J Chiou, J Yan, Y Qiu, N Dai, A Wang, N Nariai, ...
Nature communications 10 (1), 1-12, 2019
|A common set of distinct features that characterize noncoding RNAs across multiple species|
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Nucleic acids research 43 (1), 104-114, 2015
|Common DNA sequence variation influences 3-dimensional conformation of the human genome|
DU Gorkin, Y Qiu, M Hu, K Fletez-Brant, T Liu, AD Schmitt, A Noor, ...
Genome biology 20 (1), 1-25, 2019
|MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments|
I Juric, M Yu, A Abnousi, R Raviram, R Fang, Y Zhao, Y Zhang, Y Qiu, ...
PLoS computational biology 15 (4), e1006982, 2019
|Single cell chromatin accessibility reveals pancreatic islet cell type-and state-specific regulatory programs of diabetes risk|
J Chiou, C Zeng, Z Cheng, JY Han, M Schlichting, S Huang, J Wang, ...
BioRxiv, 693671, 2019
|An atlas of dynamic chromatin landscapes in mouse fetal development|
DU Gorkin, I Barozzi, Y Zhao, Y Zhang, H Huang, AY Lee, B Li, J Chiou, ...
Nature 583 (7818), 744-751, 2020
|Removing unwanted variation between samples in Hi-C experiments|
K Fletez-Brant, Y Qiu, DU Gorkin, M Hu, KD Hansen
BioRxiv, 214361, 2020
|An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum|
Y Li, S Preissl, X Hou, K Zhang, R Fang, Y Qiu, O Poirion, B Li, Y Yan, ...
|Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development|
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|FIREcaller: an R package for detecting frequently interacting regions from Hi-C data|
C Crowley, Y Yang, Y Qiu, B Hu, H Won, B Ren, M Hu, Y Li
bioRxiv, 619288, 2019