Dimos Goundaroulis

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Andrzej StasiakUniversity of Lausanne, SwitzerlandVerified email at unil.ch
Julien DorierUniversity of LausanneVerified email at unil.ch
Sofia LambropoulouProfessor of Mathematics, National Technical University of AthensVerified email at math.ntua.gr
Pawel Dabrowski-TumanskiCardinal Stefan Wyszynski UniversityVerified email at uksw.edu.pl
Joanna SułkowskaWarsaw University, Centre of New TechnologiesVerified email at cent.uw.edu.pl
Eric RawdonUniversity of St. ThomasVerified email at stthomas.edu
Fabrizio BenedettiCHUVVerified email at chuv.ch
Aristides KontogeorgisNational and Kapodistrian University of Athens, Department of MathematicsVerified email at math.uoa.gr
Kenneth C MillettProfessor of Mathematics, University of California, Santa BarbaraVerified email at math.ucsb.edu
Piotr SułkowskiFaculty of Physics, University of Warsaw & California Institute of TechnologyVerified email at fuw.edu.pl
Paweł RubachWarsaw School of EconomicsVerified email at sgh.waw.pl
Neslihan GügümcüAssistant Professor, Izmir Institute of TechnologyVerified email at iyte.edu.tr
Dusan RackoPolymer Institute, Slovak Academy of SciencesVerified email at unil.ch
Agnese BarbensiUniversity of QueenslandVerified email at uq.edu.au
Erez Lieberman AidenBaylor College of MedicineVerified email at erez.com
Sotirios Zarogiannis, PhD, MPHProfessor & Chair, Department of Physiology, Faculty of Medicine, University of ThessalyVerified email at med.uth.gr
K GOURGOULIANISrespiratory medicine dept, University of ThessalyVerified email at med.uth.gr
Erasmia RoukaFaculty of Nursing, University of ThessalyVerified email at med.uth.gr
Oliver VipondUniversity of OxfordVerified email at maths.ox.ac.uk
Barbara I. MahlerUniversity of OxfordVerified email at maths.ox.ac.uk

Dimos Goundaroulis

Other namesDimos Gkountaroulis, Dimoklis Gkountaroulis

Instructor, Baylor College of Medicine

Verified email at bcm.edu

Computational Biology Genomics Deep Learning Applied Knot Theory Topology


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KnotProt 2.0: a database of proteins with knots and other entangled structures P Dabrowski-Tumanski, P Rubach, D Goundaroulis, J Dorier, P Sułkowski, ... Nucleic acids research 47 (D1), D367-D375, 2018	108	2018
Chromatin alternates between A and B compartments at kilobase scale for subgenic organization HL Harris, H Gu, M Olshansky, A Wang, I Farabella, Y Eliaz, A Kalluchi, ... Nature Communications 14 (1), 3303, 2023	89	2023
Topological models for open-knotted protein chains using the concepts of knotoids and bonded knotoids D Goundaroulis, N Gügümcü, S Lambropoulou, J Dorier, A Stasiak, ... Polymers 9 (9), 444, 2017	83	2017
The ENCODE uniform analysis pipelines BC Hitz, L Jin-Wook, O Jolanki, MS Kagda, K Graham, P Sud, I Gabdank, ... Biorxiv, 2023	80	2023
Studies of global and local entanglements of individual protein chains using the concept of knotoids D Goundaroulis, J Dorier, F Benedetti, A Stasiak Scientific Reports 7 (1), 6309, 2017	75	2017
Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids J Dorier, D Goundaroulis, F Benedetti, A Stasiak Bioinformatics 34 (19), 3402-3404, 2018	51	2018
Chromatin loop extrusion and chromatin unknotting D Racko, F Benedetti, D Goundaroulis, A Stasiak Polymers 10 (10), 1126, 2018	43	2018
Chromatin is frequently unknotted at the megabase scale D Goundaroulis, EL Aiden, A Stasiak Biophysical journal 118 (9), 2268-2279, 2020	32	2020
Framization of the Temperley-Lieb algebra D Goundaroulis, J Juyumaya, A Kontogeorgis, S Lambropoulou Math. Res. Letters 24 (7), 299 - 345, 2017	29*	2017
Topology in soft and biological matter L Tubiana, GP Alexander, A Barbensi, D Buck, JHE Cartwright, ... Physics Reports 1075, 1-137, 2024	28	2024
A systematic classification of knotoids on the plane and on the sphere D Goundaroulis, J Dorier, A Stasiak arXiv preprint arXiv:1902.07277, 2019	26	2019
The Yokonuma-Temperley-Lieb Algebra D Goundaroulis, J Juyumaya, A Kontogeorgis, S Lambropoulou Banach Center Publications 103, 77-99, 2014	24*	2014
Theta‐curves in proteins P Dabrowski‐Tumanski, D Goundaroulis, A Stasiak, EJ Rawdon, ... Protein science 33 (9), e5133, 2024	18*	2024
f -distance of knotoids and protein structure A Barbensi, D Goundaroulis Proceedings of the Royal Society A 477 (2246), 20200898, 2021	11	2021
A new two-variable generalization of the Jones polynomial D Goundaroulis, S Lambropoulou Journal of Knot Theory and Its Ramifications 28 (11), 1940005, 2019	11	2019
Knotoids and protein structure Dimos Goundaroulis, Julien Dorier, and Andrzej Stasiak D Goundaroulis Topology and geometry of biopolymers 746, 185, 2020	10	2020
In silico transcriptomic analysis of wound-healing-associated genes in malignant pleural mesothelioma E Rouka, E Beltsios, D Goundaroulis, GD Vavougios, EI Solenov, ... Medicina 55 (6), 267, 2019	10	2019
Framization of the Temperley-Lieb algebra and related link invariants D Goundaroulis Ph. D. Thesis, 2014	9	2014
Classical link invariants from the framizations of the Iwahori-Hecke algebra and the Temperley-Lieb algebra of type D Goundaroulis, S Lambropoulou J. Knot Theory Ramif. 26 (9), 1743005, 2017	8	2017
A topological selection of folding pathways from native states of knotted proteins A Barbensi, N Yerolemou, O Vipond, BI Mahler, P Dabrowski-Tumanski, ... Symmetry 13 (9), 1670, 2021	6	2021

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