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Dimos Goundaroulis
Dimos Goundaroulis
Other namesDimos Gkountaroulis, Dimoklis Gkountaroulis
Verified email at bcm.edu
Title
Cited by
Cited by
Year
KnotProt 2.0: a database of proteins with knots and other entangled structures
P Dabrowski-Tumanski, P Rubach, D Goundaroulis, J Dorier, P Sułkowski, ...
Nucleic acids research 47 (D1), D367-D375, 2018
942018
Topological models for open-knotted protein chains using the concepts of knotoids and bonded knotoids
D Goundaroulis, N Gügümcü, S Lambropoulou, J Dorier, A Stasiak, ...
Polymers 9 (9), 444, 2017
702017
Studies of global and local entanglements of individual protein chains using the concept of knotoids
D Goundaroulis, J Dorier, F Benedetti, A Stasiak
Scientific Reports 7 (1), 6309, 2017
682017
Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids
J Dorier, D Goundaroulis, F Benedetti, A Stasiak
Bioinformatics 34 (19), 3402-3404, 2018
432018
Chromatin loop extrusion and chromatin unknotting
D Racko, F Benedetti, D Goundaroulis, A Stasiak
Polymers 10 (10), 1126, 2018
382018
Chromatin alternates between A and B compartments at kilobase scale for subgenic organization
HL Harris, H Gu, M Olshansky, A Wang, I Farabella, Y Eliaz, A Kalluchi, ...
Nature communications 14 (1), 3303, 2023
352023
Chromatin is frequently unknotted at the megabase scale
D Goundaroulis, EL Aiden, A Stasiak
Biophysical journal 118 (9), 2268-2279, 2020
312020
The ENCODE uniform analysis pipelines
BC Hitz, JW Lee, O Jolanki, MS Kagda, K Graham, P Sud, I Gabdank, ...
Research Square, 2023
302023
Framization of the Temperley-Lieb algebra
D Goundaroulis, J Juyumaya, A Kontogeorgis, S Lambropoulou
Math. Res. Letters 24 (7), 299 - 345, 2017
25*2017
The Yokonuma-Temperley-Lieb Algebra
D Goundaroulis, J Juyumaya, A Kontogeorgis, S Lambropoulou
Banach Center Publications 103, 77-99, 2014
22*2014
A systematic classification of knotoids on the plane and on the sphere
D Goundaroulis, J Dorier, A Stasiak
arXiv preprint arXiv:1902.07277, 2019
202019
-curves in proteins
P Dabrowski-Tumanski, D Goundaroulis, A Stasiak, JI Sulkowska
arXiv preprint arXiv:1908.05919, 2019
152019
A new two-variable generalization of the Jones polynomial
D Goundaroulis, S Lambropoulou
Journal of Knot Theory and Its Ramifications 28 (11), 1940005, 2019
102019
In silico transcriptomic analysis of wound-healing-associated genes in malignant pleural mesothelioma
E Rouka, E Beltsios, D Goundaroulis, GD Vavougios, EI Solenov, ...
Medicina 55 (6), 267, 2019
92019
f -distance of knotoids and protein structure
A Barbensi, D Goundaroulis
Proceedings of the Royal Society A 477 (2246), 20200898, 2021
82021
Knotoids and protein structure
D Goundaroulis, J Dorier, A Stasiak
Topol. Geom. Biopolym 746, 185, 2020
72020
Classical link invariants from the framizations of the Iwahori-Hecke algebra and the Temperley-Lieb algebra of type
D Goundaroulis, S Lambropoulou
J. Knot Theory Ramif. 26 (9), 1743005, 2017
72017
A topological selection of folding pathways from native states of knotted proteins
A Barbensi, N Yerolemou, O Vipond, BI Mahler, P Dabrowski-Tumanski, ...
Symmetry 13 (9), 1670, 2021
62021
Open knots
J Dorier, D Goundaroulis, EJ Rawdon, A Stasiak
Encyclopedia of knot theory, 859-876, 2021
32021
Framization of a Temperley-Lieb algebra of type B
M Flores, D Goundaroulis
Journal of Pure and Applied Algebra 224 (6), 106273, 2020
32020
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Articles 1–20