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CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ... Bioinformatics 34 (20), 3586-3588, 2018 | 324 | 2018 |
CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures B Kozlikova, E Sebestova, V Sustr, J Brezovsky, O Strnad, L Daniel, ... Bioinformatics 30 (18), 2684-2685, 2014 | 168 | 2014 |
CAVER: algorithms for analyzing dynamics of tunnels in macromolecules A Pavelka, E Sebestova, B Kozlikova, J Brezovsky, J Sochor, ... IEEE/ACM transactions on computational biology and bioinformatics 13 (3 …, 2015 | 156 | 2015 |
Visualization of biomolecular structures: State of the art revisited B Kozlíková, M Krone, M Falk, N Lindow, M Baaden, D Baum, I Viola, ... Computer Graphics Forum 36 (8), 178-204, 2017 | 145 | 2017 |
Intrinsic-extrinsic convolution and pooling for learning on 3d protein structures P Hermosilla, M Schäfer, M Lang, G Fackelmann, PP Vázquez, ... arXiv preprint arXiv:2007.06252, 2020 | 82 | 2020 |
Visual analysis of biomolecular cavities: State of the art M Krone, B Kozlíková, N Lindow, M Baaden, D Baum, J Parulek, HC Hege, ... Computer Graphics Forum 35 (3), 527-551, 2016 | 82 | 2016 |
Instant construction and visualization of crowded biological environments T Klein, L Autin, B Kozlíková, DS Goodsell, A Olson, ME Gröller, I Viola IEEE transactions on visualization and computer graphics 24 (1), 862-872, 2017 | 51 | 2017 |
Multiscale molecular visualization H Miao, T Klein, D Kouřil, P Mindek, K Schatz, ME Gröller, B Kozlíková, ... Journal of molecular biology 431 (6), 1049-1070, 2019 | 42 | 2019 |
Visualization of biomolecular structures: State of the art B Kozlikova, M Krone, M Falk, N Lindow, M Baaden, D Baum, I Viola, ... | 41 | 2015 |
Computational analysis of protein tunnels and channels J Brezovsky, B Kozlikova, J Damborsky Protein Engineering: Methods and Protocols, 25-42, 2018 | 40 | 2018 |
AnimoAminoMiner: Exploration of protein tunnels and their properties in molecular dynamics J Byška, M Le Muzic, ME Gröller, I Viola, B Kozlikova IEEE transactions on visualization and computer graphics 22 (1), 747-756, 2015 | 34 | 2015 |
MoleCollar and tunnel heat map visualizations for conveying spatio‐temporo‐chemical properties across and along protein voids J Byška, A Jurčík, ME Gröller, I Viola, B Kozlikova Computer Graphics Forum 34 (3), 1-10, 2015 | 33 | 2015 |
VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality V Brůža, J Byška, J Mičan, B Kozlíková Computers & Graphics 98, 280-292, 2021 | 32 | 2021 |
Labels on levels: Labeling of multi-scale multi-instance and crowded 3D biological environments D Kouřil, L Čmolík, B Kozlíková, HY Wu, G Johnson, DS Goodsell, ... IEEE transactions on visualization and computer graphics 25 (1), 977-986, 2018 | 30 | 2018 |
The moving target of visualization software for an increasingly complex world G Reina, H Childs, K Matković, K Bühler, M Waldner, D Pugmire, ... Computers & graphics 87, 12-29, 2020 | 29 | 2020 |
Analysis of long molecular dynamics simulations using interactive focus+ context visualization J Byška, T Trautner, SM Marques, J Damborský, B Kozlíková, M Waldner Computer Graphics Forum 38 (3), 441-453, 2019 | 27 | 2019 |
Visualization of large molecular trajectories D Duran, P Hermosilla, T Ropinski, B Kozlikova, A Vinacua, PP Vázquez IEEE Transactions on Visualization and Computer Graphics 25 (1), 987-996, 2018 | 27 | 2018 |
State of the art of molecular visualization in immersive virtual environments D Kuťák, P Vázquez, T Isenberg, M Krone, M Baaden, J Byška, ... Computer Graphics Forum 42 (6), e14738, 2023 | 25 | 2023 |
Interactive exploration of ligand transportation through protein tunnels K Furmanová, M Jarešová, J Byška, A Jurčík, J Parulek, H Hauser, ... BMC bioinformatics 18, 1-16, 2017 | 25 | 2017 |