| The revised classification of eukaryotes SM Adl, AGB Simpson, CE Lane, J Lukeš, D Bass, SS Bowser, MW Brown, ... Journal of Eukaryotic Microbiology 59 (5), 429-514, 2012 | 1347 | 2012 |
| Eukaryotic plankton diversity in the sunlit ocean C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ... Science 348 (6237), 1261605, 2015 | 714 | 2015 |
| The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy L Guillou, D Bachar, S Audic, D Bass, C Berney, L Bittner, C Boutte, ... Nucleic Acids Research 41, D597-604, 2013 | 410 | 2013 |
| CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms J Pawlowski, S Audic, S Adl, D Bass, L Belbahri, C Berney, SS Bowser, ... PLoS Biology 10 (11), e1001419, 2012 | 330 | 2012 |
| Swarm: robust and fast clustering method for amplicon-based studies F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn PeerJ 2, e593, 2014 | 324 | 2014 |
| Patterns of rare and abundant marine microbial eukaryotes R Logares, S Audic, D Bass, L Bittner, C Boutte, R Christen, JM Claverie, ... Current Biology 24 (8), 813-821, 2014 | 230 | 2014 |
| Evaluating support for the current classification of eukaryotic diversity LW Parfrey, E Barbero, E Lasser, M Dunthorn, D Bhattacharya, ... PLoS Genetics 2 (12), e220, 2006 | 195 | 2006 |
| Marine protist diversity in European coastal waters and sediments as revealed by high‐throughput sequencing R Massana, A Gobet, S Audic, D Bass, L Bittner, C Boutte, A Chambouvet, ... Environmental microbiology 17 (10), 4035-4049, 2015 | 175 | 2015 |
| Swarm v2: highly-scalable and high-resolution amplicon clustering F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn PeerJ 3, e1420, 2015 | 146 | 2015 |
| Revisions to the classification, nomenclature, and diversity of eukaryotes SM Adl, D Bass, CE Lane, J Lukeš, CL Schoch, A Smirnov, S Agatha, ... Journal of Eukaryotic Microbiology 66 (1), 4-119, 2019 | 88 | 2019 |
| Comparing the hyper‐variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity M Dunthorn, J Klier, J Bunge, T Stoeck Journal of Eukaryotic Microbiology 59 (2), 185-187, 2012 | 88 | 2012 |
| Molecular diversity and distribution of marine fungi across 130 European environmental samples TA Richards, G Leonard, F Mahé, J del Campo, S Romac, MDM Jones, ... Proceedings of the Royal Society B: Biological Sciences 282 (1819), 20152243, 2015 | 73 | 2015 |
| Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests F Mahé, C de Vargas, D Bass, L Czech, A Stamatakis, E Lara, D Singer, ... Nature Ecology & Evolution 1 (4), 0091, 2017 | 65 | 2017 |
| Delimiting operational taxonomic units for assessing ciliate environmental diversity using small‐subunit rRNA gene sequences M Nebel, C Pfabel, A Stock, M Dunthorn, T Stoeck Environmental Microbiology Reports 3 (2), 154-158, 2011 | 62 | 2011 |
| Placing environmental next generation-sequencing amplicons from microbial eukaryotes into a phylogenetic context M Dunthorn, J Otto, SA Berger, A Stamatakis, F Mahé, S Romac, ... Molecular Biology and Evolution 31, 993-1009, 2014 | 61 | 2014 |
| Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling M Dunthorn, W Foissner, LA Katz Molecular Phylogenetics and Evolution 46 (1), 316-327, 2008 | 54 | 2008 |
| Cryptic sex in Symbiodinium (Alveolata, Dinoflagellata) is supported by an inventory of meiotic genes J Chi, MW Parrow, M Dunthorn Journal of Eukaryotic Microbiology 61 (3), 322-327, 2014 | 46 | 2014 |
| Expanding character sampling for the molecular phylogeny of euplotid ciliates (Protozoa, Ciliophora) using three markers, with a focus on the family Uronychiidae J Huang, M Dunthorn, W Song Molecular Phylogenetics and Evolution 63 (3), 598-605, 2012 | 44 | 2012 |
| Secretive ciliates and putative asexuality in microbial eukaryotes M Dunthorn, LA Katz Trends in Microbiology 18 (5), 183-188, 2010 | 39 | 2010 |
| Comparing high‐throughput platforms for sequencing the V4 region of SSU‐rDNA in environmental microbial eukaryotic diversity surveys F Mahé, J Mayor, J Bunge, J Chi, T Siemensmeyer, T Stoeck, B Wahl, ... Journal of Eukaryotic Microbiology 62, 338-345, 2015 | 38 | 2015 |
