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Alvin Qin
Alvin Qin
Broad Institute
Verified email at broadinstitute.org - Homepage
Title
Cited by
Cited by
Year
Expanded encyclopedias of DNA elements in the human and mouse genomes
Encode Project Consortium
Nature, 2020
14022020
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis
R Zheng, C Wan, S Mei, Q Qin, Q Wu, H Sun, CH Chen, M Brown, ...
Nucleic acids research 47 (D1), D729-D735, 2018
5992018
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse
S Mei, Q Qin, Q Wu, H Sun, R Zheng, C Zang, M Zhu, J Wu, X Shi, L Taing, ...
Nucleic Acids Research, gkw983, 2016
4842016
Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data
Q Qin, J Fan, R Zheng, C Wan, S Mei, Q Wu, H Sun, M Brown, J Zhang, ...
Genome Biology 21 (1), 1-14, 2020
1792020
Integrative analyses of single-cell transcriptome and regulome using MAESTRO
C Wang, D Sun, X Huang, C Wan, Z Li, Y Han, Q Qin, J Fan, X Qiu, Y Xie, ...
Genome Biology 21 (1), 1-28, 2020
1332020
Cistrome Cancer: A Web Resource for Integrative Gene Regulation Modeling in Cancer
S Mei, CA Meyer, R Zheng, Q Qin, Q Wu, P Jiang, B Li, X Shi, B Wang, ...
Cancer research 77 (21), e19-e22, 2017
1252017
Imputation for transcription factor binding predictions based on deep learning
Q Qin, J Feng
PLOS Computational Biology 13 (2), e1005403, 2017
1132017
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline
Q Qin, S Mei, Q Wu, H Sun, L Li, L Taing, S Chen, F Li, T Liu, C Zang, ...
BMC bioinformatics 17 (1), 404, 2016
1022016
Perspectives on ENCODE
MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ...
Nature 583 (7818), 693-698, 2020
962020
MethylPurify: tumor purity deconvolution and differential methylation detection from single tumor DNA methylomes
X Zheng, Q Zhao, HJ Wu, W Li, H Wang, CA Meyer, QA Qin, H Xu, C Zang, ...
Genome biology 15 (7), 419, 2014
962014
Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles
S Wang, C Zang, T Xiao, J Fan, S Mei, Q Qin, Q Wu, X Li, K Xu, HH He, ...
Genome Research 26 (10), 1417-1429, 2016
882016
CRISPR-DO for genome-wide CRISPR design and optimization
J Ma, J Köster, Q Qin, S Hu, W Li, C Chen, Q Cao, J Wang, S Mei, Q Liu, ...
Bioinformatics 32 (21), 3336-3338, 2016
612016
CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse
Q Wang, J Huang, H Sun, J Liu, J Wang, Q Wang, Q Qin, S Mei, C Zhao, ...
Nucleic acids research 42 (D1), D450-D458, 2014
492014
Clinical utility of 24-h rapid trio-exome sequencing for critically ill infants
H Wang, Y Qian, Y Lu, Q Qin, G Lu, G Cheng, P Zhang, L Yang, B Wu, ...
npj Genomic Medicine 5 (1), 1-6, 2020
472020
High-dimensional genomic data bias correction and data integration using MANCIE
C Zang, T Wang, K Deng, B Li, Q Qin, T Xiao, S Zhang, CA Meyer, HH He, ...
Nature communications 7, 2016
442016
Integrative analysis reveals the transcriptional collaboration between EZH2 and E2F1 in the regulation of cancer-related gene expression
H Xu, K Xu, HH He, C Zang, CH Chen, Y Chen, Q Qin, S Wang, C Wang, ...
Molecular Cancer Research 14 (2), 163-172, 2016
382016
Single-cell analysis and functional characterization uncover the stem cell hierarchies and developmental origins of rhabdomyosarcoma
Y Wei, Q Qin, C Yan, MN Hayes, SP Garcia, H Xi, D Do, AH Jin, TC Eng, ...
Nature Cancer, 1-15, 2022
262022
Survival Motor Neuron Gene Copy Number Analysis by Exome Sequencing: Assisting Spinal Muscular Atrophy Diagnosis and Carrier Screening
B Liu, Y Lu, B Wu, L Yang, R Liu, H Wang, X Dong, G Li, Q Qin, W Zhou
The Journal of Molecular Diagnostics, 2020
212020
Single-cell imaging of T cell immunotherapy responses in vivo
C Yan, Q Yang, S Zhang, DG Millar, EJ Alpert, D Do, A Veloso, ...
Journal of Experimental Medicine 218 (10), e20210314, 2021
182021
singlecellVR: interactive visualization of single-cell data in virtual reality
DF Stein, H Chen, ME Vinyard, Q Qin, RD Combs, Q Zhang, L Pinello
Frontiers in genetics, 1992, 2021
162021
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