Simon Anders
Simon Anders
ZMBH, University of Heidelberg
Verified email at fs.tum.de - Homepage
Title
Cited by
Cited by
Year
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
MI Love, W Huber, S Anders
Genome biology 15 (12), 550, 2014
175682014
Differential expression analysis for sequence count data
S Anders, W Huber
Nature Precedings, 1-1, 2010
107212010
HTSeq—a Python framework to work with high-throughput sequencing data
S Anders, PT Pyl, W Huber
Bioinformatics 31 (2), 166-169, 2015
86272015
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
16722015
Detecting differential usage of exons from RNA-seq data
S Anders, A Reyes, W Huber
Nature Precedings, 1-1, 2012
9742012
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
S Anders, DJ McCarthy, Y Chen, M Okoniewski, GK Smyth, W Huber, ...
Nature protocols 8 (9), 1765, 2013
9022013
Accounting for technical noise in single-cell RNA-seq experiments
P Brennecke, S Anders, JK Kim, AA Kołodziejczyk, X Zhang, V Proserpio, ...
Nature methods 10 (11), 1093-1095, 2013
6212013
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
M Morgan, S Anders, M Lawrence, P Aboyoun, H Pages, R Gentleman
Bioinformatics 25 (19), 2607-2608, 2009
3592009
Differential expression of RNA-Seq data at the gene level–the DESeq package
S Anders, W Huber
Heidelberg, Germany: European Molecular Biology Laboratory (EMBL) 10 …, 2012
3162012
Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements
K Zarnack, J König, M Tajnik, I Martincorena, S Eustermann, I Stévant, ...
Cell 152 (3), 453-466, 2013
2822013
Differential analysis of count data–the DESeq2 package
M Love, S Anders, W Huber
Genome Biol 15 (550), 10.1186, 2014
2282014
RNA-Seq workflow: gene-level exploratory analysis and differential expression
MI Love, S Anders, V Kim, W Huber
F1000Research 4, 2015
1492015
HTSeq: Analysing high-throughput sequencing data with Python
S Anders, PT Pyl, W Huber
1242010
Analysing RNA-Seq data with the DESeq package
S Anders
Mol Biol 43 (4), 1-17, 2010
1152010
Genome-wide analysis of mRNA decay patterns during early Drosophiladevelopment
S Thomsen, S Anders, SC Janga, W Huber, CR Alonso
Genome biology 11 (9), R93, 2010
1112010
Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions
A Schlattl, S Anders, SM Waszak, W Huber, JO Korbel
Genome research 21 (12), 2004-2013, 2011
992011
Fast simulation of stabilizer circuits using a graph-state representation
S Anders, HJ Briegel
Physical Review A 73 (2), 022334, 2006
992006
An efficient method for genome-wide polyadenylation site mapping and RNA quantification
S Wilkening, V Pelechano, AI Järvelin, MM Tekkedil, S Anders, V Benes, ...
Nucleic acids research 41 (5), e65-e65, 2013
982013
FourCSeq: analysis of 4C sequencing data
FA Klein, T Pakozdi, S Anders, Y Ghavi-Helm, EEM Furlong, W Huber
Bioinformatics 31 (19), 3085-3091, 2015
732015
Visualization of genomic data with the Hilbert curve
S Anders
Bioinformatics 25 (10), 1231-1235, 2009
732009
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