Shantanu Sharma, Ph.D.
Shantanu Sharma, Ph.D.
Founder, CEO,
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Ab initio RNA folding by discrete molecular dynamics: from structure prediction to folding mechanisms
F Ding, S Sharma, P Chalasani, VV Demidov, NE Broude, NV Dokholyan
Rna 14 (6), 1164-1173, 2008
iFoldRNA: three-dimensional RNA structure prediction and folding
S Sharma, F Ding, NV Dokholyan
Bioinformatics 24 (17), 1951-1952, 2008
Protein folding: Then and now
Y Chen, F Ding, H Nie, AW Serohijos, S Sharma, KC Wilcox, S Yin, ...
Archives of biochemistry and biophysics 469 (1), 4-19, 2008
Multiscale modeling of nucleosome dynamics
S Sharma, F Ding, NV Dokholyan
Biophysical journal 92 (5), 1457-1470, 2007
Molecular dynamic simulations of cisplatin-and oxaliplatin-d (GG) intrastand cross-links reveal differences in their conformational dynamics
S Sharma, P Gong, B Temple, D Bhattacharyya, NV Dokholyan, ...
Journal of molecular biology 373 (5), 1123-1140, 2007
The path of DNA in the kinetochore
K Bloom, S Sharma, NV Dokholyan
Current biology: CB 16 (8), R276, 2006
Structure alignment via Delaunay tetrahedralization
J Roach, S Sharma, M Kapustina, CW Carter Jr
Proteins: Structure, Function, and Bioinformatics 60 (1), 66-81, 2005
iFold: a platform for interactive folding simulations of proteins
S Sharma, F Ding, H Nie, D Watson, A Unnithan, J Lopp, D Pozefsky, ...
Bioinformatics 22 (21), 2693-2694, 2006
Probing protein aggregation using simplified models and discrete molecular dynamics
S Sharma, F Ding, NV Dokholyan
Frontiers in bioscience: a journal and virtual library 13, 4795, 2008
Flanking bases influence the nature of DNA distortion by platinum 1, 2-intrastrand (GG) cross-links
D Bhattacharyya, S Ramachandran, S Sharma, W Pathmasiri, CL King, ...
PLoS one 6 (8), e23582, 2011
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