Chris Evelo

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Martina KutmonAssistant professor, Maastricht University, The NetherlandsVerified email at maastrichtuniversity.nl
Egon WillighagenTGX, NUTRIM, Maastricht University/NL, ORCID:0000-0001-7542-0286, https://social.edu.nl/@egonwVerified email at maastrichtuniversity.nl
Friederike EhrhartAssistant professor, Maastricht UniversityVerified email at maastrichtuniversity.nl
Dr. Susan Steinbusch-CoortAssociate Professor, dept of Bionformatics-BiGCaT, NUTRIM, Maastricht University, NLVerified email at maastrichtuniversity.nl
Kristina HanspersGladstone InstitutesVerified email at gladstone.ucsf.edu
Andra WaagmeesterMicelio bvbaVerified email at micelio.be
Thomas KelderCTO, EdgeLeap, The NetherlandsVerified email at edgeleap.com
Alexander R PicoGladstone InstitutesVerified email at gladstone.ucsf.edu
Lars EijssenMaastricht UniversityVerified email at maastrichtuniversity.nl
Michiel AdriaensAssistant Professor, Maastricht Centre for Systems Biology - MaCSBioVerified email at maastrichtuniversity.nl
Elisa CirilloVerified email at maastrichtuniversity.nl
Bruce ConklinInvestigator Gladstone and Professor at UCSFVerified email at gladstone.ucsf.edu
Carole GobleProfessor of Computer Science, University of ManchesterVerified email at manchester.ac.uk
Anders RiuttaInstitute for Data Science and Biotechnology, Gladstone InstitutesVerified email at andersriutta.com
Denise SlenterPostDoctoral Researcher, Translational Genomics, Maastricht UniversityVerified email at maastrichtuniversity.nl
Anwesha Bohler (née Dutta)Program Manager, AmazonVerified email at amazon.com
Marvin MartensPostDoctoral Researcher, Maastricht UniversityVerified email at maastrichtuniversity.nl
Ryan A. MillerMaastricht UniversityVerified email at maastrichtuniversity.nl
Paul GrothProfessor, INDE Lab, University of AmsterdamVerified email at uva.nl
Mark D WilkinsonIsaac Peral Distinguished Researcher, UPMVerified email at upm.es

Chris Evelo

Head Department of Bioinformatics - BiGCaT, Maastricht University ORCID:0000-0002-5301-3142

Verified email at maastrichtuniversity.nl - Homepage

bioinformatics systems biology network biology data science


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The FAIR Guiding Principles for scientific data management and stewardship MD Wilkinson, M Dumontier, IJJ Aalbersberg, G Appleton, M Axton, ... Scientific data 3 (1), 1-9, 2016	16837	2016
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research DN Slenter, M Kutmon, K Hanspers, A Riutta, J Windsor, N Nunes, ... Nucleic acids research 46 (D1), D661-D667, 2018	982	2018
’t Hoen MD Wilkinson, M Dumontier, IJ Aalbersberg, G Appleton, M Axton, A Baak, ... PAC, Hooft, R, Kuhn, T, Kok, R, Kok, J, Lusher, SJ, Martone, ME, Mons, A …, 2016	879	2016
WikiPathways: pathway editing for the people AR Pico, T Kelder, MP Van Iersel, K Hanspers, BR Conklin, C Evelo PLoS biology 6 (7), e184, 2008	816	2008
WikiPathways: connecting communities M Martens, A Ammar, A Riutta, A Waagmeester, DN Slenter, K Hanspers, ... Nucleic acids research 49 (D1), D613-D621, 2021	745	2021
WikiPathways: building research communities on biological pathways T Kelder, MP Van Iersel, K Hanspers, M Kutmon, BR Conklin, CT Evelo, ... Nucleic acids research 40 (D1), D1301-D1307, 2012	651	2012
WikiPathways: capturing the full diversity of pathway knowledge M Kutmon, A Riutta, N Nunes, K Hanspers, EL Willighagen, A Bohler, ... Nucleic acids research 44 (D1), D488-D494, 2016	508	2016
PathVisio 3: an extendable pathway analysis toolbox M Kutmon, MP van Iersel, A Bohler, T Kelder, N Nunes, AR Pico, CT Evelo PLoS computational biology 11 (2), e1004085, 2015	507	2015
The Chemistry Development Kit (CDK) v2. 0: atom typing, depiction, molecular formulas, and substructure searching EL Willighagen, JW Mayfield, J Alvarsson, A Berg, L Carlsson, ... Journal of cheminformatics 9, 1-19, 2017	506	2017
Toward interoperable bioscience data SA Sansone, P Rocca-Serra, D Field, E Maguire, C Taylor, O Hofmann, ... Nature genetics 44 (2), 121-126, 2012	491	2012
Presenting and exploring biological pathways with PathVisio MP van Iersel, T Kelder, AR Pico, K Hanspers, S Coort, BR Conklin, ... BMC bioinformatics 9, 1-9, 2008	441	2008
Open PHACTS: semantic interoperability for drug discovery AJ Williams, L Harland, P Groth, S Pettifer, C Chichester, EL Willighagen, ... Drug discovery today 17 (21-22), 1188-1198, 2012	396	2012
Adverse outcome pathways: opportunities, limitations and open questions M Leist, A Ghallab, R Graepel, R Marchan, R Hassan, SH Bennekou, ... Archives of Toxicology 91, 3477-3505, 2017	369	2017
FAIR principles: interpretations and implementation considerations A Jacobsen, R de Miranda Azevedo, N Juty, D Batista, S Coles, R Cornet, ... Data intelligence 2 (1-2), 10-29, 2020	365	2020
GO-Elite: a flexible solution for pathway and ontology over-representation AC Zambon, S Gaj, I Ho, K Hanspers, K Vranizan, CT Evelo, BR Conklin, ... Bioinformatics 28 (16), 2209-2210, 2012	299	2012
Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature Methods, 2016	264	2016
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020	260	2020
From nanotechnology to nanomedicine: applications to cancer research R Seigneuric, L Markey, D SA Nuyten, C Dubernet, C TA Evelo, E Finot, ... Current Molecular Medicine 10 (7), 640-652, 2010	255	2010
Thrombospondin-2 is essential for myocardial matrix integrity: increased expression identifies failure-prone cardiac hypertrophy B Schroen, S Heymans, U Sharma, WM Blankesteijn, S Pokharel, ... Circulation research 95 (5), 515-522, 2004	243	2004
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services MP van Iersel, AR Pico, T Kelder, J Gao, I Ho, K Hanspers, BR Conklin, ... BMC bioinformatics 11, 1-7, 2010	220	2010

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