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Basem Al-Shayeb
Basem Al-Shayeb
NSF Pre-doctoral Fellow, UC Berkeley
Verified email at berkeley.edu
Title
Cited by
Cited by
Year
CRISPR-CasΦ from huge phages is a hypercompact genome editor
P Pausch*, B Al-Shayeb*, E Bisom-Rapp, CA Tsuchida, Z Li, BF Cress, ...
Science 369 (6501), 333-337, 2020
4162020
CasX enzymes comprise a distinct family of RNA-guided genome editors
JJ Liu, N Orlova, BL Oakes, E Ma, HB Spinner, KLM Baney, J Chuck, ...
Nature 566 (7743), 218-223, 2019
4102019
Clades of huge phages from across Earth’s ecosystems
B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ...
Nature 578 (7795), 425-431, 2020
3912020
Genome sequencing of sewage detects regionally prevalent SARS-CoV-2 variants
A Crits-Christoph, RS Kantor, MR Olm, ON Whitney, B Al-Shayeb, YC Lou, ...
Mbio 12 (1), 2021
2812021
Petabase-scale sequence alignment catalyses viral discovery
RC Edgar*, J Taylor*, T Altman*, P Barbera*, D Meleshko*, V Lin*, ...
bioRxiv, 2020
2792020
Broad-spectrum enzymatic inhibition of CRISPR-Cas12a
GJ Knott, BW Thornton, MJ Lobba, JJ Liu, B Al-Shayeb, KE Watters, ...
Nature structural & molecular biology 26 (4), 315-321, 2019
1102019
The NIH somatic cell genome editing program
K Saha, EJ Sontheimer, PJ Brooks, MR Dwinell, CA Gersbach, DR Liu, ...
Nature 592 (7853), 195-204, 2021
982021
Sewage, Salt, Silica, and SARS-CoV-2 (4S): An Economical Kit-Free Method for Direct Capture of SARS-CoV-2 RNA from Wastewater
ON Whitney, LC Kennedy, VB Fan, A Hinkle, R Kantor, H Greenwald, ...
Environmental science & technology 55 (8), 4880-4888, 2021
762021
Tools for interpretation of wastewater SARS-CoV-2 temporal and spatial trends demonstrated with data collected in the San Francisco Bay Area
HD Greenwald, LC Kennedy, A Hinkle, ON Whitney, VB Fan, ...
Water Research X 12, 100111, 2021
732021
DNA interference states of the hypercompact CRISPR–CasΦ effector
P Pausch, KM Soczek, DA Herbst, CA Tsuchida, B Al-Shayeb, JF Banfield, ...
Nature Structural & Molecular Biology 28 (8), 652-661, 2021
612021
A scoutRNA Is Required for Some Type V CRISPR-Cas Systems
LB Harrington, E Ma, JS Chen, IP Witte, D Gertz, D Paez-Espino, ...
Molecular Cell 79 (3), 416-424. e5, 2020
592020
Diverse virus-encoded CRISPR-Cas systems include streamlined genome editors
B Al-Shayeb, P Skopintsev, KM Soczek, EC Stahl, Z Li, E Groover, ...
Cell 185 (24), 4574-4586. e16, 2022
542022
Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a
GJ Knott, BF Cress, JJ Liu, BW Thornton, RJ Lew, B Al-Shayeb, ...
elife 8, e49110, 2019
462019
Borgs are giant extrachromosomal elements with the potential to augment methane oxidation
B Al-Shayeb, MC Schoelmerich, J West-Roberts, LE Valentin-Alvarado, ...
bioRxiv, 2021.07. 10.451761, 2021
382021
Candidate phyla radiation roizmanbacteria from hot springs have novel and unexpectedly abundant CRISPR-Cas systems
LX Chen, B Al-Shayeb, R Méheust, WJ Li, JA Doudna, JF Banfield
Frontiers in microbiology 10, 928, 2019
362019
Borgs are giant genetic elements with potential to expand metabolic capacity
B Al-Shayeb, MC Schoelmerich, J West-Roberts, LE Valentin-Alvarado, ...
Nature 610 (7933), 731-736, 2022
342022
Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes
AL Borges, YC Lou, R Sachdeva, B Al-Shayeb, PI Penev, AL Jaffe, S Lei, ...
Nature Microbiology 7 (6), 918-927, 2022
292022
Patterns of gene content and co-occurrence constrain the evolutionary path toward animal association in candidate phyla radiation bacteria
AL Jaffe, AD Thomas, C He, R Keren, LE Valentin-Alvarado, P Munk, ...
MBio 12 (4), 10.1128/mbio. 00521-21, 2021
252021
Genome editing in plants using the compact editor CasΦ
Z Li, Z Zhong, Z Wu, P Pausch, B Al-Shayeb, J Amerasekera, JA Doudna, ...
Proceedings of the National Academy of Sciences 120 (4), e2216822120, 2023
242023
Toward bioremediation of methylmercury using silica encapsulated Escherichia coli harboring the mer operon
AL Kane, B Al-Shayeb, PV Holec, S Rajan, NE Le Mieux, SC Heinsch, ...
PloS one 11 (1), e0147036, 2016
222016
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