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Saeed Omidi
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Cited by
Year
MODA: an efficient algorithm for network motif discovery in biological networks
S Omidi, F Schreiber, A Masoudi-Nejad
Genes & genetic systems 84 (5), 385-395, 2009
1812009
Temperature regulates splicing efficiency of the cold-inducible RNA-binding protein gene Cirbp
I Gotic, S Omidi, F Fleury-Olela, N Molina, F Naef, U Schibler
Genes & development 30 (17), 2005-2017, 2016
742016
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
502016
Memory and relatedness of transcriptional activity in mammalian cell lineages
NE Phillips, A Mandic, S Omidi, F Naef, DM Suter
Nature communications 10 (1), 1208, 2019
382019
Improved immune genetic algorithm for clustering protein-protein interaction network
H Ravaee, A Masoudi-Nejad, S Omidi, A Moeini
2010 IEEE International Conference on BioInformatics and BioEngineering, 174-179, 2010
152010
Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors
S Omidi, M Zavolan, M Pachkov, J Breda, S Berger, E van Nimwegen
PLoS computational biology 13 (7), e1005176, 2017
142017
Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs
S Berger, M Pachkov, P Arnold, S Omidi, N Kelley, S Salatino, ...
Genome research 29 (7), 1164-1177, 2019
12*2019
Network evolution: theory and mechanisms
S Omidi, A Masoudi-Nejad
Computational Social Network Analysis: Trends, Tools and Research Advances …, 2010
32010
Acoustofluidic Engineering of Functional Vessel-on-a-Chip
Y Wu, Y Zhao, K Islam, Y Zhou, S Omidi, Y Berdichevsky, Y Liu
ACS Biomaterials Science & Engineering 9 (11), 6273-6281, 2023
12023
Simulation, Assessment, and Improvement of a Microfluidic Chip Used for Motile-Sperms Separation
L Dalir, S Omidi, M Saadatmand, F Heidari
Iranian Chemical Engineering Journal, 2023
2023
Gene-specific transcriptional memory in mammalian cell lineages
NE Phillips, A Mandic, S Omidi, F Naef, DM Suter
bioRxiv, 411447, 2018
2018
The Genomic Context and Corecruitment of SP1 Affect ERR alpha Coactivation by PGC-1 alpha in Muscle Cells (vol 30, pg 809, 2016)
S Salatino, B Kupr, M Baresic, S Omidi, E van Nimwegen, C Handschin
ENDOCRINOLOGY 159 (7), 2703-2703, 2018
2018
CORRIGENDUM FOR “The Genomic Context and Corecruitment of SP1 Affect ERRa Coactivation by PGC-1a in Muscle Cells”
BK Salatino, M Baresic, E van Nimwegen, C Handschin, S Salatino, ...
2018
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