Cedric Notredame

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	All	Since 2016
Citations	36080	19085
h-index	51	39
i10-index	86	73

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Co-authors

des higginsUniversity College DublinVerified email at ucd.ie
Paolo Di TommasoComparative Bioinformatics at CRGVerified email at crg.es
Giovanni BussottiResearch engineer at Institut PasteurVerified email at pasteur.fr
Ionas ErbCentre for Genomic Regulation (CRG), BarcelonaVerified email at crg.eu
Jia-Ming Chang 張家銘Assistant professor, Department of Computer Science, National Chengchi UniversityVerified email at nccu.edu.tw
Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Jean-François TalyCRG - Centre for Genomic regulation - BarcelonaVerified email at crg.es
Evan FlodenSeqera LabsVerified email at seqera.io
Moretti SebastienSIB Swiss Institute of BioinformaticsVerified email at unil.ch
Jaap HeringaProfessor of Bioinformatics, Vrije Universiteit AmsterdamVerified email at vu.nl
Philipp BucherGroup leader in Bioinformatics, EPFL and Swiss Institute of Bioinformatics, LausanneVerified email at epfl.ch
armougom fabriceVerified email at univ-amu.fr
Jose Espinosa-CarrascoPostdoctoral researcher, The Institute for Research in Biomedicine (IRB Barcelona)Verified email at crg.eu
Orla O'SullivanTeagasc Food Research CentreVerified email at teagasc.ie
Orom uaAarhus UniversityVerified email at mbg.au.dk
Vlasov PKInstitute of Science and Technology Austria (IST Austria)Verified email at ist.ac.at
Michael S. Breen, PhDDepts. Psychiatry, Genetics and Genomic Sciences, Icahn School of Medicine at Mount SinaiVerified email at mssm.edu
Eric WidmerProfessor of Sociology, University of GenevaVerified email at unige.ch
Jacques-Antoine GauthierVerified email at unil.ch
Ioannis XenariosSIB Swiss Institute of BionformaticsVerified email at isb-sib.ch

Cedric Notredame

Principal Investigator, Centre For Genomic Regulation CRG, Barcelona

Verified email at crg.eu - Homepage

Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012	11466	2012
T-Coffee: A novel method for fast and accurate multiple sequence alignment C Notredame, DG Higgins, J Heringa Journal of molecular biology 302 (1), 205-217, 2000	7276	2000
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome research 22 (9), 1775-1789, 2012	3688	2012
Long noncoding RNAs with enhancer-like function in human cells UA Ørom, T Derrien, M Beringer, K Gumireddy, A Gardini, G Bussotti, ... Cell 143 (1), 46-58, 2010	1643	2010
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014	1283	2014
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension P Di Tommaso, S Moretti, I Xenarios, M Orobitg, A Montanyola, JM Chang, ... Nucleic acids research 39 (suppl_2), W13-W17, 2011	802	2011
SAGA: sequence alignment by genetic algorithm C Notredame, DG Higgins Nucleic acids research 24 (8), 1515-1524, 1996	699	1996
M-Coffee: combining multiple sequence alignment methods with T-Coffee IM Wallace, O O'sullivan, DG Higgins, C Notredame Nucleic acids research 34 (6), 1692-1699, 2006	538	2006
Recent progress in multiple sequence alignment: a survey C Notredame Pharmacogenomics 3 (1), 131-144, 2002	496	2002
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee F Armougom, S Moretti, O Poirot, S Audic, P Dumas, B Schaeli, V Keduas, ... Nucleic acids research 34 (suppl_2), W604-W608, 2006	469	2006
Nextflow enables reproducible computational workflows P Di Tommaso, M Chatzou, EW Floden, PP Barja, E Palumbo, ... Nature biotechnology 35 (4), 316-319, 2017	446	2017
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, LA Blomberg, P Bouffard, ... PLoS Biol 8 (9), e1000475, 2010	404	2010
3DCoffee: combining protein sequences and structures within multiple sequence alignments O O'Sullivan, K Suhre, C Abergel, DG Higgins, C Notredame Journal of molecular biology 340 (2), 385-395, 2004	383	2004
Bioinformatics for dummies JM Claverie, C Notredame John Wiley & Sons, 2006	370	2006
Tcoffee@ igs: a web server for computing, evaluating and combining multiple sequence alignments O Poirot, E O'Toole, C Notredame Nucleic acids research 31 (13), 3503-3506, 2003	335	2003
COFFEE: an objective function for multiple sequence alignments. C Notredame, L Holm, DG Higgins Bioinformatics (Oxford, England) 14 (5), 407-422, 1998	324	1998
Epistasis as the primary factor in molecular evolution MS Breen, C Kemena, PK Vlasov, C Notredame, FA Kondrashov Nature 490 (7421), 535-538, 2012	322	2012
Recent evolutions of multiple sequence alignment algorithms C Notredame PLoS Comput Biol 3 (8), e123, 2007	269	2007
Upcoming challenges for multiple sequence alignment methods in the high-throughput era C Kemena, C Notredame Bioinformatics 25 (19), 2455-2465, 2009	230	2009
A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3 S Dietmann, J Park, C Notredame, A Heger, M Lappe, L Holm Nucleic acids research 29 (1), 55-57, 2001	216	2001

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