Koen Van den Berge
Koen Van den Berge
Postdoctoral researcher, University of California, Berkeley
Verified email at berkeley.edu
Title
Cited by
Cited by
Year
Non-neural expression of SARS-CoV-2 entry genes in the olfactory epithelium suggests mechanisms underlying anosmia in COVID-19 patients
D Brann, T Tsukahara, C Weinreb, DW Logan, SR Datta
BioRxiv, 2020
752020
Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications
K Van den Berge, F Perraudeau, C Soneson, MI Love, D Risso, JP Vert, ...
Genome Biology 19 (24), 250126, 2018
482018
A sex-inducing pheromone triggers cell cycle arrest and mate attraction in the diatom Seminavis robusta
S Moeys, J Frenkel, C Lembke, JTF Gillard, V Devos, K Van den Berge, ...
Scientific reports 6, 19252, 2016
362016
stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage
K Van den Berge, C Soneson, MD Robinson, L Clement
Genome biology 18 (1), 151, 2017
242017
RNA sequencing data: hitchhiker's guide to expression analysis
K Van Den Berge, KM Hembach, C Soneson, S Tiberi, L Clement, ...
Annual Review of Biomedical Data Science 2, 2019
142019
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia. bioRxiv. 2020
DH Brann, T Tsukahara, C Weinreb, M Lipovsek, K Van den Berge, ...
Neuroscience. Google Scholar, 0
13
Trajectory-based differential expression analysis for single-cell sequencing data
K Van den Berge, HR De Bezieux, K Street, W Saelens, R Cannoodt, ...
Nature communications 11 (1), 1-13, 2020
62020
Neurogenomic profiling reveals distinct gene expression profiles between brain parts that are consistent in Ophthalmotilapia cichlids
S Derycke, L Kéver, K Herten, K Van den Berge, M Van Steenberge, ...
Frontiers in neuroscience 12, 136, 2018
52018
Effect of management and age of ploughed out grass–clover on forage maize yield and residual soil nitrogen
M Cougnon, K Van Den Berge, T D'Hose, L Clement, D Reheul
The Journal of Agricultural Science 156 (6), 748-757, 2018
22018
Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta
G Bilcke, K Van den Berge, S De Decker, E Bonneure, N Poulsen, ...
BioRxiv, 2020
12020
An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldrige, SA Ament, A Bartlett, ...
Biorxiv, 2020
12020
zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications
K Van den Berge, C Soneson, MI Love, MD Robinson, L Clement
bioRxiv, 157982, 2017
12017
Distinctive Growth and Transcriptional Changes of the Diatom Seminavis robusta in Response to Quorum Sensing Related Compounds
F Stock, G Bilcke, S De Decker, CM Osuna-Cruz, K Van den Berge, ...
Frontiers in Microbiology 11, 1240, 2020
2020
Improving replicability in single-cell RNA-Seq cell type discovery
HR de Bézieux, K Street, S Fischer, K Van den Berge, R Chance, D Risso, ...
2020
Improving replicability in single-cell RNA-Seq cell type discovery with Dune
HR De Bézieux, K Street, S Fischer, K Van den Berge, R Chance, D Risso, ...
BioRxiv, 2020
2020
Statistical methods for differential expression analysis in bulk and single-cell RNA-sequencing applications
K Van den Berge
Ghent University, 2019
2019
Multi-domain evidence for fine-scale bioregionalisation patterns in the Antarctic lacustrine microbiome
T Bjorn, E Verleyen, M Sweetlove, B Van de Vijver, K Van den Berge, ...
Book of Abstracts, 194, 2017
2017
Biogeography and macroevolution in the Arctic and Antarctic lacustrine microbiomes
S Maxime, B Tytgat, E Verleyen, K Van den Berge, S D’hondt, D Obbels, ...
Book of Abstracts, 193, 2017
2017
Reproductive barriers in the Seminavis robusta species complex and their role in species diversification
S De Decker, K Van den Berge, P Vanormelingen, K Sabbe, W Vyverman
EUROPEAN JOURNAL OF PHYCOLOGY 50, 126-127, 2015
2015
Quantifying expression divergence of duplicated genes with microarrays
K Van den Berge, R De Smet, Y Van de Peer, L Clement
23rd Annual meeting of the Belgian Statistical Society, 2015
2015
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Articles 1–20