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Rajesh Ramaswamy
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A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks
R Ramaswamy, N González-Segredo, IF Sbalzarini
The Journal of chemical physics 130 (24), 2009
902009
Antimicrobial peptides induce growth of phosphatidylglycerol domains in a model bacterial membrane
AA Polyansky, R Ramaswamy, PE Volynsky, IF Sbalzarini, SJ Marrink, ...
The Journal of Physical Chemistry Letters 1 (20), 3108-3111, 2010
852010
OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers
P Incardona, A Leo, Y Zaluzhnyi, R Ramaswamy, IF Sbalzarini
Computer Physics Communications 241, 155-177, 2019
642019
Discreteness-induced concentration inversion in mesoscopic chemical systems
R Ramaswamy, N González-Segredo, IF Sbalzarini, R Grima
Nature communications 3 (1), 779, 2012
612012
A partial-propensity variant of the composition-rejection stochastic simulation algorithm for chemical reaction networks
R Ramaswamy, IF Sbalzarini
The Journal of chemical physics 132 (4), 2010
442010
Using DC PSE operator discretization in Eulerian meshless collocation methods improves their robustness in complex geometries
GC Bourantas, BL Cheeseman, R Ramaswamy, IF Sbalzarini
Computers & Fluids 136, 285-300, 2016
342016
Activity induces traveling waves, vortices and spatiotemporal chaos in a model actomyosin layer
R Ramaswamy, F Jülicher
Nature Scientific Reports 6, 20838, 2016
312016
Intrinsic noise alters the frequency spectrum of mesoscopic oscillatory chemical reaction systems
R Ramaswamy, IF Sbalzarini
Scientific Reports 1 (1), 154, 2011
232011
Exact on-lattice stochastic reaction-diffusion simulations using partial-propensity methods
R Ramaswamy, IF Sbalzarini
The Journal of chemical physics 135 (24), 2011
202011
A hybrid particle-mesh method for incompressible active polar viscous gels
R Ramaswamy, G Bourantas, F Jülicher, IF Sbalzarini
Journal of Computational Physics 291, 334-361, 2015
192015
A partial-propensity formulation of the stochastic simulation algorithm for chemical reaction networks with delays
R Ramaswamy, IF Sbalzarini
The Journal of chemical physics 134 (1), 2011
182011
pSSAlib: The partial-propensity stochastic chemical network simulator
O Ostrenko, P Incardona, R Ramaswamy, L Brusch, IF Sbalzarini
PLOS Computational Biology 13 (12), e1005865, 2017
122017
Noise-induced modulation of the relaxation kinetics around a non-equilibrium steady state of non-linear chemical reaction networks
R Ramaswamy, IF Sbalzarini, N González-Segredo
PLoS One 6 (1), e16045, 2011
112011
Fast exact stochastic simulation algorithms using partial propensities
R Ramaswamy, IF Sbalzarini
AIP Conference Proceedings 1281 (1), 1338-1341, 2010
112010
Partitioned Parallel Processing Approach for Predicting Multi-Million Neuron Interconnectivity in the Brain: Involving Soma-Axon-Dendrites-Synapse
N Venkateswaran, R Rajesh
Brain Inspired Cognitive Systems, 2004
52004
Global parameter identification of stochastic reaction networks from single trajectories
CL Müller, R Ramaswamy, IF Sbalzarini
Advances in Systems Biology, 477-498, 2012
42012
Post COVID syndrome in patients with COVID-19: a cross-sectional study
V Shinde, M Master, R Rajesh
Safety and Health at Work 13, S121, 2022
32022
Towards Predicting a Million Neuron Interconnect Structure in the Brain: Involving Soma-Axon-Dendrites-Synapse
R Ramaswamy
Thesissubmitted to Waran Research Foundation, 2004
32004
Particle Methods
R Ramaswamy, IF Sbalzarini
12015
Predicting the Morphology of Arbitrary Dendritic Trees through Simulated Annealing
N Venkateswaran, R Rajesh, R Rajasimhan, N Sudarshan, M Muhilan
1
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Articles 1–20