| Synthesis of phylogeny and taxonomy into a comprehensive tree of life CE Hinchliff, SA Smith, JF Allman, JG Burleigh, R Chaudhary, LM Coghill, ... Proceedings of the National Academy of Sciences (PNAS) 112 (41), 12764-12769, 2015 | 711 | 2015 |
| Establishing guidelines to harmonize tumor mutational burden (TMB): in silico assessment of variation in TMB quantification across diagnostic platforms: phase I of the Friends … DM Merino, LM McShane, D Fabrizio, V Funari, SJ Chen, JR White, ... Journal for immunotherapy of cancer 8 (1), 2020 | 375 | 2020 |
| iGTP: a software package for large-scale gene tree parsimony analysis R Chaudhary, MS Bansal, A Wehe, D Fernández-Baca, O Eulenstein BMC bioinformatics 11, 1-7, 2010 | 100 | 2010 |
| Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance R Chaudhary, JG Burleigh, D Fernandez-Baca Algorithms for Molecular Biology 8, 28, 2013 | 46 | 2013 |
| MulRF: a software package for phylogenetic analysis using multi-copy gene trees R Chaudhary, D Fernández-Baca, JG Burleigh Bioinformatics 31 (3), 432-433, 2015 | 43 | 2015 |
| A scalable solution for tumor mutational burden from formalin-fixed, paraffin-embedded samples using the Oncomine Tumor Mutation Load Assay R Chaudhary, L Quagliata, JP Martin, I Alborelli, D Cyanam, V Mittal, ... Translational lung cancer research 7 (6), 616, 2018 | 42 | 2018 |
| Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence R Chaudhary, JG Burleigh, O Eulenstein BMC bioinformatics 13, 1-10, 2012 | 32 | 2012 |
| Fast local search for unrooted Robinson-Foulds supertrees R Chaudhary, JG Burleigh, D Fernández-Baca IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (4 …, 2012 | 30 | 2012 |
| Assessing approaches for inferring species trees from multi-copy genes R Chaudhary, B Boussau, JG Burleigh, D Fernández-Baca Systematic Biology 64 (2), 325-339, 2015 | 19 | 2015 |
| South Asian medical cohorts reveal strong founder effects and high rates of homozygosity JD Wall, JF Sathirapongsasuti, R Gupta, A Rasheed, R Venkatesan, ... Nature communications 14 (1), 3377, 2023 | 11 | 2023 |
| Laughinghouse, 4th CE Hinchliff, SA Smith, JF Allman, JG Burleigh, R Chaudhary, LM Coghill, ... HD, McTavish, EJ, Midford, PE, Owen, CL, Ree, RH, Rees, JA, Soltis, DE …, 2015 | 9 | 2015 |
| Algorithms for rapid error correction for the gene duplication problem R Chaudhary, JG Burleigh, O Eulenstein Bioinformatics Research and Applications: 7th International Symposium, ISBRA …, 2011 | 7 | 2011 |
| Genome‐Wide Polygenic Score Predicts Large Number of High Risk Individuals in Monogenic Undiagnosed Young Onset Parkinson's Disease Patients from India PL Kukkle, TS Geetha, R Chaudhary, JF Sathirapongsasuti, V Goyal, ... Advanced Biology 6 (11), 2101326, 2022 | 3 | 2022 |
| Validation of a Targeted Next-Generation Sequencing Panel for Tumor Mutation Burden Analysis: Results from the Onconetwork Immuno-Oncology Consortium F Fenizia, I Alborelli, JL Costa, C Vollbrecht, B Bellosillo, W Dinjens, ... The Journal of Molecular Diagnostics 23 (7), 882-893, 2021 | 2 | 2021 |
| Constructing and Employing Tree Alignment Graphs for Phylogenetic Synthesis R Chaudhary, D Fernandez-Baca, JG Burleigh Algorithms for Computational Biology 9199, 97-108, 2015 | 1 | 2015 |
| Methods for detecting mutation load from a tumor sample FH Ruchi Chaudhary US Patent 11,101,019, 2021 | | 2021 |
| Algorithms for constructing more accurate and inclusive phylogenetic trees R Chaudhary | | 2013 |
