Arttu Jolma
Arttu Jolma
Post-doctoral fellow
Adresse e-mail validée de utoronto.ca
Titre
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Année
DNA-binding specificities of human transcription factors
A Jolma, J Yan, T Whitington, J Toivonen, KR Nitta, P Rastas, ...
Cell 152 (1-2), 327-339, 2013
8682013
Genome‐wide analysis of ETS‐family DNA‐binding in vitro and in vivo
GH Wei, G Badis, MF Berger, T Kivioja, K Palin, M Enge, M Bonke, ...
The EMBO journal 29 (13), 2147-2160, 2010
5102010
The human transcription factors
SA Lambert, A Jolma, LF Campitelli, PK Das, Y Yin, M Albu, X Chen, ...
Cell 172 (4), 650-665, 2018
5052018
Impact of cytosine methylation on DNA binding specificities of human transcription factors
Y Yin, E Morgunova, A Jolma, E Kaasinen, B Sahu, S Khund-Sayeed, ...
Science 356 (6337), 2017
3882017
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
A Jolma, T Kivioja, J Toivonen, L Cheng, G Wei, M Enge, M Taipale, ...
Genome research 20 (6), 861-873, 2010
3782010
DNA-dependent formation of transcription factor pairs alters their binding specificity
A Jolma, Y Yin, KR Nitta, K Dave, A Popov, M Taipale, M Enge, T Kivioja, ...
Nature 527 (7578), 384-388, 2015
3042015
Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites
J Yan, M Enge, T Whitington, K Dave, J Liu, I Sur, B Schmierer, A Jolma, ...
Cell 154 (4), 801-813, 2013
2652013
A prostate cancer susceptibility allele at 6q22 increases RFX6 expression by modulating HOXB13 chromatin binding
Q Huang, T Whitington, P Gao, JF Lindberg, Y Yang, J Sun, MR Väisänen, ...
Nature genetics 46 (2), 126-135, 2014
1352014
Conservation of transcription factor binding specificities across 600 million years of bilateria evolution
KR Nitta, A Jolma, Y Yin, E Morgunova, T Kivioja, J Akhtar, K Hens, ...
elife 4, e04837, 2015
1212015
Myt1l safeguards neuronal identity by actively repressing many non-neuronal fates
M Mall, MS Kareta, S Chanda, H Ahlenius, N Perotti, B Zhou, SD Grieder, ...
Nature 544 (7649), 245-249, 2017
802017
Multiparameter functional diversity of human C2H2 zinc finger proteins
FW Schmitges, E Radovani, HS Najafabadi, M Barazandeh, LF Campitelli, ...
Genome research 26 (12), 1742-1752, 2016
642016
Transcription factor family‐specific DNA shape readout revealed by quantitative specificity models
L Yang, Y Orenstein, A Jolma, Y Yin, J Taipale, R Shamir, R Rohs
Molecular systems biology 13 (2), 910, 2017
592017
Structural insights into the DNA-binding specificity of E2F family transcription factors
E Morgunova, Y Yin, A Jolma, K Dave, B Schmierer, A Popov, N Eremina, ...
Nature communications 6 (1), 1-8, 2015
292015
Methods for analysis of transcription factor DNA-binding specificity in vitro
A Jolma, J Taipale
A handbook of transcription factors, 155-173, 2011
292011
A protein activity assay to measure global transcription factor activity reveals determinants of chromatin accessibility
B Wei, A Jolma, B Sahu, LM Orre, F Zhong, F Zhu, T Kivioja, I Sur, J Lehtiö, ...
Nature biotechnology 36 (6), 521-529, 2018
112018
Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima
E Morgunova, Y Yin, PK Das, A Jolma, F Zhu, A Popov, Y Xu, L Nilsson, ...
Elife 7, e32963, 2018
82018
Beyond the balance of activator and repressor
T Whitington, A Jolma, J Taipale
Sci. Signal. 4 (176), pe29-pe29, 2011
62011
Modular discovery of monomeric and dimeric transcription factor binding motifs for large data sets
J Toivonen, T Kivioja, A Jolma, Y Yin, J Taipale, E Ukkonen
Nucleic acids research 46 (8), e44-e44, 2018
52018
Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences
A Jolma, J Zhang, E Mondragón, E Morgunova, T Kivioja, KU Laverty, ...
Genome Research 30 (7), 962-973, 2020
42020
Strong binding activity of few transcription factors is a major determinant of open chromatin
B Wei, A Jolma, B Sahu, LM Orre, F Zhong, F Zhu, T Kivioja, IK Sur, ...
bioRxiv, 204743, 2017
12017
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