Nilah Monnier Ioannidis
Nilah Monnier Ioannidis
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REVEL: an ensemble method for predicting the pathogenicity of rare missense variants
NM Ioannidis, JH Rothstein, V Pejaver, S Middha, SK McDonnell, ...
The American Journal of Human Genetics 99 (4), 877-885, 2016
The kinetochore-bound Ska1 complex tracks depolymerizing microtubules and binds to curved protofilaments
JC Schmidt, H Arthanari, A Boeszoermenyi, NM Dashkevich, ...
Developmental Cell 23 (5), 968-980, 2012
Inferring transient particle transport dynamics in live cells
N Monnier, Z Barry, HY Park, KC Su, Z Katz, BP English, A Dey, K Pan, ...
Nature Methods 12 (9), 838-840, 2015
Bayesian approach to MSD-based analysis of particle motion in live cells
N Monnier, SM Guo, M Mori, J He, P Lénárt, M Bathe
Biophysical Journal 103 (3), 616-626, 2012
Mapping translation 'hot-spots' in live cells by tracking single molecules of mRNA and ribosomes
ZB Katz, BP English, T Lionnet, YJ Yoon, N Monnier, B Ovryn, M Bathe, ...
eLife 5, e10415, 2016
Identification of susceptibility loci for cutaneous squamous cell carcinoma
MM Asgari, W Wang, NM Ioannidis, J Itnyre, T Hoffmann, E Jorgenson, ...
Journal of Investigative Dermatology 136 (5), 930-937, 2016
Intracellular transport by an anchored homogeneously contracting F-actin meshwork
M Mori, N Monnier, N Daigle, M Bathe, J Ellenberg, P Lénárt
Current Biology 21 (7), 606-611, 2011
Unique resistance of I/LnJ mice to a retrovirus is due to sustained interferon γ–dependent production of virus-neutralizing antibodies
A Purdy, L Case, M Duvall, M Overstrom-Coleman, N Monnier, ...
The Journal of Experimental Medicine 197 (2), 233-243, 2003
Estimating prevalence for limb-girdle muscular dystrophy based on public sequencing databases
W Liu, S Pajusalu, NJ Lake, G Zhou, N Ioannidis, P Mittal, NE Johnson, ...
Genetics in Medicine 21 (11), 2512-2520, 2019
An Arp2/3 nucleated F-actin shell fragments nuclear membranes at nuclear envelope breakdown in starfish oocytes
M Mori, K Somogyi, H Kondo, N Monnier, HJ Falk, P Machado, M Bathe, ...
Current Biology 24 (12), 1421-1428, 2014
Bayesian approach to the analysis of fluorescence correlation spectroscopy data II: application to simulated and in vitro data
SM Guo, J He, N Monnier, G Sun, T Wohland, M Bathe
Analytical Chemistry 84 (9), 3880-3888, 2012
UMD‐DYSF, a novel locus specific database for the compilation and interactive analysis of mutations in the dysferlin gene
G Blandin, C Beroud, V Labelle, K Nguyen, N Wein, D Hamroun, ...
Human Mutation 33 (3), E2317-E2331, 2012
Cutaneous squamous cell cancer (cSCC) risk and the human leukocyte antigen (HLA) system
P Yesantharao, W Wang, NM Ioannidis, S Demehri, AS Whittemore, ...
Human Immunology 78 (4), 327-335, 2017
Two-stage study of familial prostate cancer by whole-exome sequencing and custom capture identifies 10 novel genes associated with the risk of prostate cancer
DJ Schaid, SK McDonnell, LM FitzGerald, L DeRycke, Z Fogarty, GG Giles, ...
European Urology 79 (3), 353-361, 2021
FIRE: functional inference of genetic variants that regulate gene expression
NM Ioannidis, JR Davis, MK DeGorter, NB Larson, SK McDonnell, ...
Bioinformatics 33 (24), 3895-3901, 2017
Tissue-specific impacts of aging and genetics on gene expression patterns in humans
R Yamamoto, R Chung, JM Vazquez, H Sheng, PL Steinberg, ...
Nature Communications 13 (1), 5803, 2022
Gene expression imputation identifies candidate genes and susceptibility loci associated with cutaneous squamous cell carcinoma
NM Ioannidis, W Wang, NA Furlotte, DA Hinds, CD Bustamante, ...
Nature Communications 9 (1), 4264, 2018
Two-color fluorescence analysis of individual virions determines the distribution of the copy number of proteins in herpes simplex virus particles
RW Clarke, N Monnier, H Li, D Zhou, H Browne, D Klenerman
Biophysical Journal 93 (4), 1329-1337, 2007
Cross-protein transfer learning substantially improves disease variant prediction
M Jagota, C Ye, C Albors, R Rastogi, A Koehl, N Ioannidis, YS Song
Genome Biology 24 (1), 182, 2023
Personal transcriptome variation is poorly explained by current genomic deep learning models
C Huang, RW Shuai, P Baokar, R Chung, R Rastogi, P Kathail, ...
Nature Genetics 55 (12), 2056-2059, 2023
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