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David Van Valen
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Cited by
Cited by
Year
Deep learning for cellular image analysis
E Moen, D Bannon, T Kudo, W Graf, M Covert, D Van Valen
Nature methods 16 (12), 1233-1246, 2019
9122019
A structured tumor-immune microenvironment in triple negative breast cancer revealed by multiplexed ion beam imaging
L Keren, M Bosse, D Marquez, R Angoshtari, S Jain, S Varma, SR Yang, ...
Cell 174 (6), 1373-1387. e19, 2018
7852018
Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments
DA Van Valen, T Kudo, KM Lane, DN Macklin, NT Quach, MM DeFelice, ...
PLOS Computational Biology 12 (11), 1-24, 2016
5512016
Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning
NF Greenwald, G Miller, E Moen, A Kong, A Kagel, T Dougherty, ...
Nature biotechnology 40 (4), 555-565, 2022
3882022
Single-cell metabolic profiling of human cytotoxic T cells
FJ Hartmann, D Mrdjen, E McCaffrey, DR Glass, NF Greenwald, ...
Nature biotechnology 39 (2), 186-197, 2021
2162021
Measuring signaling and RNA-seq in the same cell links gene expression to dynamic patterns of NF-κB activation
K Lane, D Van Valen, MM DeFelice, DN Macklin, T Kudo, A Jaimovich, ...
Cell systems 4 (4), 458-469. e5, 2017
1602017
DeepCell Kiosk: scaling deep learning–enabled cellular image analysis with Kubernetes
D Bannon, E Moen, M Schwartz, E Borba, T Kudo, N Greenwald, ...
Nature Methods, 1-3, 2021
136*2021
The immunoregulatory landscape of human tuberculosis granulomas
EF McCaffrey, M Donato, L Keren, Z Chen, A Delmastro, MB Fitzpatrick, ...
Nature immunology 23 (2), 318-329, 2022
1182022
A single-molecule Hershey-Chase experiment
D Van Valen, D Wu, YJ Chen, H Tuson, P Wiggins, R Phillips
Current Biology 22 (14), 1339-1343, 2012
752012
Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning
E Moen, E Borba, G Miller, M Schwartz, D Bannon, N Koe, I Camplisson, ...
Biorxiv, 803205, 2019
552019
Biochemistry on a leash: the roles of tether length and geometry in signal integration proteins
D Van Valen, M Haataja, R Phillips
Biophysical journal 96 (4), 1275-1292, 2009
552009
Ion-dependent dynamics of DNA ejections for bacteriophage λ
D Wu, D Van Valen, Q Hu, R Phillips
Biophysical journal 99 (4), 1101-1109, 2010
342010
A spatially resolved timeline of the human maternal–fetal interface
S Greenbaum, I Averbukh, E Soon, G Rizzuto, A Baranski, NF Greenwald, ...
Nature 619 (7970), 595-605, 2023
182023
Multiplexed imaging of human tuberculosis granulomas uncovers immunoregulatory features conserved across tissue and blood
EF McCaffrey, M Donato, L Keren, Z Chen, M Fitzpatrick, V Jojic, ...
Biorxiv, 2020.06. 08.140426, 2020
172020
The multimodality cell segmentation challenge: toward universal solutions
J Ma, R Xie, S Ayyadhury, C Ge, A Gupta, R Gupta, S Gu, Y Zhang, G Lee, ...
Nature Methods, 1-11, 2024
82024
Imaging cell biology
B Andrews, JB Chang, L Collinson, D Li, E Lundberg, J Mahamid, ...
Nature Cell Biology 24 (8), 1180-1185, 2022
82022
Spatiotemporal coordination at the maternal-fetal interface promotes trophoblast invasion and vascular remodeling in the first half of human pregnancy
S Greenbaum, I Averbukh, E Soon, G Rizzuto, A Baranski, NF Greenwald, ...
Biorxiv, 2021.09. 08.459490, 2021
82021
Biomonitoring and precision health in deep space supported by artificial intelligence
RT Scott, LM Sanders, EL Antonsen, JJA Hastings, S Park, G Mackintosh, ...
Nature Machine Intelligence 5 (3), 196-207, 2023
72023
Biological research and self-driving labs in deep space supported by artificial intelligence
LM Sanders, RT Scott, JH Yang, AA Qutub, H Garcia Martin, DC Berrios, ...
Nature Machine Intelligence 5 (3), 208-219, 2023
62023
Beyond low earth orbit: biomonitoring, artificial intelligence, and precision space health
RT Scott, EL Antonsen, LM Sanders, JJA Hastings, S Park, G Mackintosh, ...
arXiv preprint arXiv:2112.12554, 2021
52021
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