Rafael Costa
Rafael Costa
Unknown affiliation
Verified email at tecnico.ulisboa.pt
Cited by
Cited by
Modeling formalisms in systems biology
D Machado, RS Costa, M Rocha, EC Ferreira, B Tidor, I Rocha
AMB Express 1 (1), 1-14, 2011
Galacto-oligosaccharides production during lactose hydrolysis by free Aspergillus oryzae β-galactosidase and immobilized on magnetic polysiloxane-polyvinyl alcohol
DFM Neri, VM Balc„o, RS Costa, ICAP Rocha, EMFC Ferreira, ...
Food Chemistry 115 (1), 92-99, 2009
Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis-Menten and approximate kinetic equations
RS Costa, D Machado, I Rocha, EC Ferrreira
Biosystems 100 (2), 150-157, 2010
Toward community standards and software for whole-cell modeling
D Waltemath, F Schreiber, JR Karr, CJ Myers, V Chelliah, ...
IEEE Transactions on Biomedical Engineering 63 (10), 2016
Exploring the gap between dynamic and constraint-based models of metabolism
D Machado, RS Costa, EC Ferreira, I Rocha, B Tidor
Metabolic engineering 14 (2), 112-119, 2012
Kinetic modeling of cell metabolism for microbial production
RS Costa, A Hartmann, S Vinga
Journal of biotechnology 219, 126-141, 2016
Identification of switched ARX models via convex optimization and expectation maximization
A Hartmann, JM Lemos, RS Costa, J Xavier, S Vinga
Journal of Process Control 28, 9-16, 2015
Critical perspective on the consequences of the limited availability of kinetic data in metabolic dynamic modelling
RS Costa, D Machado, I Rocha, EC Ferreira
Systems Biology, IET 5 (3), 157-163, 2011
KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems
RS Costa, A VerŪssimo, S Vinga
BMC Systems Biology 8 (1), 85, 2014
An extended dynamic model of Lactococcus lactis metabolism for mannitol and 2, 3-butanediol production
RS Costa, A Hartmann, P Gaspar, AR Neves, S Vinga
Molecular BioSystems 10 (3), 628-639, 2014
Implementation of a specific rate controller in a fed-batch E. coli fermentation
I Rocha, ACA Veloso, S Carneiro, RS Costa, EC Ferreira
International Federation of Automatic Control (IFAC), 2008
Identifying IIR filter coefficients using particle swarm optimization with application to reconstruction of missing cardiovascular signals
A Hartmann, JM Lemos, RS Costa, S Vinga
Engineering Applications of Artificial Intelligence 34, 193-198, 2014
A critical review on modelling formalisms and simulation tools in computational biosystems
D Machado, R Costa, M Rocha, I Rocha, B Tidor, E Ferreira
Distributed Computing, Artificial Intelligence, Bioinformatics, Soft†…, 2009
Model transformation of metabolic networks using a Petri net based framework
D Machado, RS Costa, M Rocha, I Rocha, B Tidor, EC Ferreira
International Workshop on Biological Processes & Petri Nets (BioPPN), CEUR†…, 2010
Large scale dynamic model reconstruction for the central carbon metabolism of Escherichia coli
R Costa, D Machado, I Rocha, E Ferreira
Distributed Computing, Artificial Intelligence, Bioinformatics, Soft†…, 2009
β-Galactosidase from Aspergillus oryzae immobilized onto different magnetic supports: A comparative experimental and modelling study of the galactooligosaccharides production
DFM Neri, VM Balc„o, RS Costa, EC Ferreira, D Torres, LM Rodrigues, ...
Exploring the cellular objective in flux balance constraint-based models
R S Costa, S Nguyen, A Hartman, S Vinga
Computational Methods in Systems Biology 8859, 211-224, 2014
Dynamic Flux Balance Analysis for Modeling Lactococcus lactis Mannitol Production
A Fernandes, R S Costa, P Gaspar, A Neves, S Vinga
ECMTB 2014, 9th European Conference on Mathematical and Theoretical Biology, 2014
Modeling the dynamics of Lactococcus lactis central metabolism for strain development
RS Costa, A Hartmann, P Gaspar, AR Neves, S Vinga
ECCB'12 - 11th European Conference on Computational Biology, I58, 2012
Multi-level dynamic Modeling in Biological Systems - Application of Hybrid Petri Nets to Network Simulation
RS Costa, D Machado, AR Neves, S Vinga
BIOINFORMATICS 2012 - International Conference on Bioinformatics Models†…, 2012
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