José Utrilla Carreri
José Utrilla Carreri
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Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium
RA LaCroix, TE Sandberg, EJ O'Brien, J Utrilla, A Ebrahim, GI Guzman, ...
Applied and environmental microbiology 81 (1), 17-30, 2015
Model-driven discovery of underground metabolic functions in Escherichia coli
GI Guzmán, J Utrilla, S Nurk, E Brunk, JM Monk, A Ebrahim, BO Palsson, ...
Proceedings of the National Academy of Sciences 112 (3), 929-934, 2015
Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments
EJ O’Brien, J Utrilla, BO Palsson
PLoS Computational Biology 12 (6), e1004998, 2016
Global rebalancing of cellular resources by pleiotropic point mutations illustrates a multi-scale mechanism of adaptive evolution
J Utrilla, EJ O’Brien, K Chen, D McCloskey, J Cheung, H Wang, ...
Cell systems 2 (4), 260-271, 2016
Engineering and adaptive evolution of Escherichia coli for D-lactate fermentation reveals GatC as a xylose transporter
J Utrilla, C Licona-Cassani, E Marcellin, G Gosset, LK Nielsen, A Martinez
Metabolic engineering 14 (5), 469-476, 2012
ATP limitation in a pyruvate formate lyase mutant of Escherichia coli MG1655 increases glycolytic flux to d-lactate
J Utrilla, G Gosset, A Martinez
Journal of industrial microbiology & biotechnology 36 (8), 1057-1062, 2009
Engineering the Escherichia coli Fermentative Metabolism
M Orencio-Trejo, J Utrilla, MT Fernández-Sandoval, G Huerta-Beristain, ...
Biosystems Engineering II, 71-107, 2010
Fast Swinnex filtration (FSF): a fast and robust sampling and extraction method suitable for metabolomics analysis of cultures grown in complex media
D McCloskey, J Utrilla, RK Naviaux, BO Palsson, AM Feist
Metabolomics 11 (1), 198-209, 2015
Specific ethanol production rate in ethanologenic Escherichia coli strain KO11 is limited by pyruvate decarboxylase
Huerta-Beristain G, J Utrilla, · Hernández-Chávez G., B F., G G., M A·
J Mol Microbiol Biotechnol 15, 55-64, 2008
Metabolic and transcriptional response of Escherichia coli with a NADP+-dependent glyceraldehyde 3-phosphate dehydrogenase from Streptococcus mutans
S Centeno-Leija, J Utrilla, N Flores, A Rodriguez, G Gosset, A Martinez
Antonie Van Leeuwenhoek 104 (6), 913-924, 2013
Production of D-lactate from sugarcane bagasse and corn stover hydrolysates using metabolic engineered Escherichia coli strains
J Utrilla, A Vargas-Tah, B Trujillo-Martínez, G Gosset, A Martinez
Bioresource technology 220, 208-214, 2016
Trade-offs between gene expression, growth and phenotypic diversity in microbial populations
J Kim, A Darlington, M Salvador, J Utrilla, JI Jiménez
Current opinion in biotechnology 62, 29-37, 2020
Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism
C Cheng, EJ O’brien, D McCloskey, J Utrilla, C Olson, RA LaCroix, ...
PLoS computational biology 15 (6), e1007066, 2019
ChIP-exo interrogation of Crp, DNA, and RNAP holoenzyme interactions
H Latif, S Federowicz, A Ebrahim, J Tarasova, R Szubin, J Utrilla, ...
PloS one 13 (5), e0197272, 2018
Bacterial diversity and population dynamics during the fermentation of palm wine from Guerrero Mexico
F Astudillo-Melgar, A Ochoa-Leyva, J Utrilla, G Huerta-Beristain
Frontiers in microbiology 10, 531, 2019
Draft genome sequence of Sphingobacterium sp. CZ-UAM, isolated from a methanotrophic consortium
JL Steffani-Vallejo, C Zuñiga, P Cruz-Morales, L Lozano, M Morales, ...
Genome Announcements 5 (33), 2017
Draft genome sequence of Pseudomonas chlororaphis ATCC 9446, a nonpathogenic bacterium with bioremediation and industrial potential
F Moreno-Avitia, L Lozano, J Utrilla, F Bolívar, A Escalante
Genome Announcements 5 (23), 2017
Strains of Escherichia coli modified by metabolic engineering to produce chemical compounds from hydrolyzed lignocellulose, pentoses, hexoses and other carbon sources
AM Jimenez, GG Lagarda, GTH Chavez, GH Beristain, BT Martinez, ...
US Patent 8,563,283, 2013
Ingeniería metabólica para incrementar el flux y rendimiento de etanol en Escherichia coli etanologénica
G Huerta-Beristain, J Utrilla-Carreri, G Hernández-Chávez, F Bolívar, ...
Revista Mexicana de Ingeniería Química 4 (1), 25-36, 2005
A quantitative method for proteome reallocation using minimal regulatory interventions
G Lastiri-Pancardo, JS Mercado-Hernández, J Kim, JI Jiménez, J Utrilla
Nature chemical biology 16 (9), 1026-1033, 2020
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