| The Encyclopedia of DNA elements (ENCODE): data portal update CA Davis, BC Hitz, CA Sloan, ET Chan, JM Davidson, I Gabdank, ... Nucleic acids research 46 (D1), D794-D801, 2018 | 1702 | 2018 |
| ENCODE data at the ENCODE portal CA Sloan, ET Chan, JM Davidson, VS Malladi, JS Strattan, BC Hitz, ... Nucleic acids research 44 (D1), D726-D732, 2016 | 534 | 2016 |
| New developments on the Encyclopedia of DNA Elements (ENCODE) data portal Y Luo, BC Hitz, I Gabdank, JA Hilton, MS Kagda, B Lam, Z Myers, P Sud, ... Nucleic acids research 48 (D1), D882-D889, 2020 | 421 | 2020 |
| Recompleting the Caenorhabditis elegans genome J Yoshimura, K Ichikawa, MJ Shoura, KL Artiles, I Gabdank, L Wahba, ... Genome research 29 (6), 1009-1022, 2019 | 114 | 2019 |
| Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens MJ Shoura, I Gabdank, L Hansen, J Merker, J Gotlib, SD Levene, AZ Fire G3: Genes, Genomes, Genetics 7 (10), 3295-3303, 2017 | 104 | 2017 |
| Nucleosome DNA Bendability Matrix (C. elegans) I Gabdank, D Barash, EN Trifonov Journal of Biomolecular Structure and Dynamics 26 (4), 403-411, 2009 | 80 | 2009 |
| Preferential translation of Hsp83 in Leishmania requires a thermosensitive polypyrimidine-rich element in the 3′ UTR and involves scanning of the 5′ UTR M David, I Gabdank, M Ben-David, A Zilka, I Orr, D Barash, M Shapira Rna 16 (2), 364-374, 2010 | 65 | 2010 |
| Principles of metadata organization at the ENCODE data coordination center EL Hong, CA Sloan, ET Chan, JM Davidson, VS Malladi, JS Strattan, ... Database 2016, baw001, 2016 | 59 | 2016 |
| Single-base resolution nucleosome mapping on DNA sequences I Gabdank, D Barash, EN Trifonov Journal of Biomolecular Structure and Dynamics 28 (1), 107-121, 2010 | 43 | 2010 |
| FineStr: a web server for single-base-resolution nucleosome positioning I Gabdank, D Barash, EN Trifonov Bioinformatics 26 (6), 845-846, 2010 | 38 | 2010 |
| Primordia Vita. Deconvolution from Modern Sequences. EN Trifonov, I Gabdank, D Barash, Y Sobolevsky Origins of Life and Evolution of Biospheres 36, 559-565, 2006 | 33 | 2006 |
| The ENCODE portal as an epigenomics resource J Jou, I Gabdank, Y Luo, K Lin, P Sud, Z Myers, JA Hilton, MS Kagda, ... Current protocols in bioinformatics 68 (1), e89, 2019 | 25 | 2019 |
| The ENCODE uniform analysis pipelines BC Hitz, JW Lee, O Jolanki, MS Kagda, K Graham, P Sud, I Gabdank, ... Research Square, 2023 | 23 | 2023 |
| In Silico Design of Small RNA Switches A Avihoo, I Gabdank, M Shapira, D Barash IEEE Transactions on Nanobioscience 6 (1), 4-11, 2007 | 23 | 2007 |
| The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ... Cell 186 (7), 1493-1511. e40, 2023 | 19 | 2023 |
| A streamlined tethered chromosome conformation capture protocol I Gabdank, S Ramakrishnan, AM Villeneuve, AZ Fire BMC genomics 17, 1-13, 2016 | 19 | 2016 |
| The RNAmute web server for the mutational analysis of RNA secondary structures A Churkin, I Gabdank, D Barash Nucleic acids research 39 (suppl_2), W92-W99, 2011 | 17 | 2011 |
| Perspectives on ENCODE F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama Nature 583 (7818), 693-699, 2020 | 16 | 2020 |
| SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata BC Hitz, LD Rowe, NR Podduturi, DI Glick, UK Baymuradov, VS Malladi, ... PloS one 12 (4), e0175310, 2017 | 16 | 2017 |
| Gamete-Type Dependent Crossover Interference Levels in a Defined Region of Caenorhabditis elegans Chromosome V I Gabdank, AZ Fire G3: Genes, Genomes, Genetics 4 (1), 117-120, 2014 | 14 | 2014 |
