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Yu Fan
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Year
Pan-cancer analysis of whole genomes
I The, TPCA of Whole, Genomes Consortium
Nature 578 (7793), 82, 2020
14942020
Improving marginal likelihood estimation for Bayesian phylogenetic model selection
W Xie, PO Lewis, Y Fan, L Kuo, MH Chen
Systematic Biology, syq085, 2010
10402010
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578 (7793), 122-128, 2020
8402020
The somatic genomic landscape of chromophobe renal cell carcinoma
CF Davis, CJ Ricketts, M Wang, L Yang, AD Cherniack, H Shen, C Buhay, ...
Cancer cell 26 (3), 319-330, 2014
8022014
Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma
S Zheng, AD Cherniack, N Dewal, RA Moffitt, L Danilova, BA Murray, ...
Cancer cell 29 (5), 723-736, 2016
6342016
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
3172015
MuSE: accounting for tumor heterogeneity using a sample-specific error model improves sensitivity and specificity in mutation calling from sequencing data
Y Fan, L Xi, DST Hughes, J Zhang, J Zhang, PA Futreal, DA Wheeler, ...
Genome Biology 17 (1), 178, 2016
2712016
Choosing among partition models in Bayesian phylogenetics
Y Fan, R Wu, MH Chen, L Kuo, PO Lewis
Molecular biology and evolution 28 (1), 523-532, 2011
2222011
An ensemble approach to accurately detect somatic mutations using SomaticSeq
LT Fang, PT Afshar, A Chhibber, M Mohiyuddin, Y Fan, JC Mu, G Gibeling, ...
Genome biology 16 (1), 1-13, 2015
1152015
Neutral tumor evolution?
M Tarabichi, I Martincorena, M Gerstung, AM Leroi, F Markowetz, ...
Nature genetics 50 (12), 1630-1633, 2018
752018
Rare variant detection using family-based sequencing analysis
G Peng, Y Fan, TB Palculict, P Shen, EC Ruteshouser, AK Chi, RW Davis, ...
Proceedings of the National Academy of Sciences 110 (10), 3985-3990, 2013
672013
Posterior predictive Bayesian phylogenetic model selection
PO Lewis, W Xie, MH Chen, Y Fan, L Kuo
Systematic biology 63 (3), 309-321, 2014
532014
Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
BioRxiv, 312041, 2018
432018
Identification of germline DICER1 mutations and loss of heterozygosity in familial Wilms tumour
TB Palculict, EC Ruteshouser, Y Fan, W Wang, L Strong, V Huff
Journal of Medical Genetics, jmedgenet-2015-103311, 2015
412015
Distribution and evolution of pseudogenes, gene losses, and a gene rearrangement in the plastid genome of the nonphotosynthetic liverwort, Aneura mirabilis (Metzgeriales …
NJ Wickett, Y Fan, PO Lewis, B Goffinet
Journal of molecular evolution 67 (1), 111-122, 2008
342008
Evolution and mutations predisposing to daptomycin resistance in vancomycin-resistant Enterococcus faecium ST736 strains
G Wang, F Yu, H Lin, K Murugesan, W Huang, AG Hoss, A Dhand, LY Lee, ...
PloS one 13 (12), 2018
322018
Multiplex target capture with double-stranded DNA probes
P Shen, W Wang, AK Chi, Y Fan, RW Davis, C Scharfe
Genome Med 5, 50, 2013
242013
FamSeq: A Variant Calling Program for Family-Based Sequencing Data Using Graphics Processing Units
G Peng, Y Fan, W Wang
PLOS Comput Biol 10 (10), e1003880, 2014
182014
Phylogenetic relationships of five species of Dorippinae (Crustacea, Decapoda) revealed by 16S rDNA sequence analysis
Y FAN, X LI, L SONG, Z CAI
Acta oceanologica sinica 23 (3), 513-519, 2004
72004
A core genome approach that enables prospective and dynamic monitoring of infectious outbreaks
H van Aggelen, R Kolde, H Chamarthi, J Loving, Y Fan, JT Fallon, ...
Scientific reports 9 (1), 1-10, 2019
62019
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Articles 1–20