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Artem Sokolov
Artem Sokolov
Head of Computational Biology, Flagship Labs 84, Inc.
Verified email at fl84inc.com
Title
Cited by
Cited by
Year
Comprehensive molecular portraits of human breast tumours
Cancer Genome Atlas Network
Nature 490 (7418), 61, 2012
10955*2012
Machine learning identifies stemness features associated with oncogenic dedifferentiation
TM Malta, A Sokolov, AJ Gentles, T Burzykowski, L Poisson, JN Weinstein, ...
Cell 173 (2), 338-354. e15, 2018
15272018
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
10342013
Clinical and genomic characterization of treatment-emergent small-cell neuroendocrine prostate cancer: a multi-institutional prospective study
R Aggarwal, J Huang, JJ Alumkal, L Zhang, FY Feng, GV Thomas, ...
Journal of Clinical Oncology 36 (24), 2492, 2018
5762018
The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
3702020
N-Myc drives neuroendocrine prostate cancer initiated from human prostate epithelial cells
JK Lee, JW Phillips, BA Smith, JW Park, T Stoyanova, EF McCaffrey, ...
Cancer cell 29 (4), 536-547, 2016
3512016
Assessing the clinical utility of cancer genomic and proteomic data across tumor types
Y Yuan, EM Van Allen, L Omberg, N Wagle, A Amin-Mansour, A Sokolov, ...
Nature biotechnology 32 (7), 644-652, 2014
3102014
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
2372016
A basal stem cell signature identifies aggressive prostate cancer phenotypes
BA Smith, A Sokolov, V Uzunangelov, R Baertsch, Y Newton, K Graim, ...
Proceedings of the National Academy of Sciences 112 (47), E6544-E6552, 2015
2192015
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open …
J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ...
The Lancet Oncology 18 (1), 132-142, 2017
1612017
A distinct DNA methylation shift in a subset of glioma CpG island methylator phenotypes during tumor recurrence
CF de Souza, TS Sabedot, TM Malta, L Stetson, O Morozova, A Sokolov, ...
Cell reports 23 (2), 637-651, 2018
1572018
Machine learning identifies candidates for drug repurposing in Alzheimer’s disease
S Rodriguez, C Hug, P Todorov, N Moret, SA Boswell, K Evans, G Zhou, ...
Nature communications 12 (1), 1033, 2021
1522021
MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging
D Schapiro, A Sokolov, C Yapp, JL Muhlich, J Hess, JR Lin, YA Chen, ...
Nature Methods, 2021
1162021
PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis
S Ng, EA Collisson, A Sokolov, T Goldstein, A Gonzalez-Perez, ...
Bioinformatics 28 (18), i640-i646, 2012
1132012
Pathway-based genomics prediction using generalized elastic net
A Sokolov, DE Carlin, EO Paull, R Baertsch, JM Stuart
PLoS computational biology 12 (3), e1004790, 2016
1122016
Unbiased tournament selection
A Sokolov, D Whitley
Proceedings of the 7th annual conference on Genetic and evolutionary …, 2005
1082005
Hierarchical classification of gene ontology terms using the GOstruct method
A Sokolov, A Ben-Hur
Journal of bioinformatics and computational biology 8 (02), 357-376, 2010
992010
One-class detection of cell states in tumor subtypes
A Sokolov, EO Paull, JM Stuart
Biocomputing 2016: Proceedings of the Pacific Symposium, 405-416, 2016
912016
Geometric subspace methods and time-delay embedding for EEG artifact removal and classification
CW Anderson, JN Knight, T O'Connor, MJ Kirby, A Sokolov
IEEE Transactions on Neural Systems and Rehabilitation Engineering 14 (2 …, 2006
892006
Characterization of neuroendocrine prostate cancer (NEPC) in patients with metastatic castration resistant prostate cancer (mCRPC) resistant to abiraterone (Abi) or …
EJ Small, J Huang, J Youngren, A Sokolov, RR Aggarwal, G Thomas, ...
Journal of Clinical Oncology 33 (15_suppl), 5003-5003, 2015
772015
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