| Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ... Nature genetics 47 (6), 632-639, 2015 | 420 | 2015 |
| Genome-scale rates of evolutionary change in bacteria S Duchêne, KE Holt, FX Weill, S Le Hello, J Hawkey, DJ Edwards, ... Microbial genomics 2 (11), 2016 | 233 | 2016 |
| Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307 K Wyres, J Hawkey, M Hetland, A Fostervold, R Wick, L Judd, M Hamidian, ... Journal of Antimicrobial Chemotherapy 74 (3), 577–581, 2019 | 137 | 2019 |
| An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid VK Wong, S Baker, TR Connor, D Pickard, AJ Page, J Dave, N Murphy, ... Nature communications 7 (1), 12827, 2016 | 130 | 2016 |
| ISMapper: Identifying insertion sequences in bacterial genomes from short read sequence data J Hawkey, M Hamidian, RR Wick, DJ Edwards, H Billman-Jacobe, ... BMC Genomics 16 (1), 667, 2015 | 125* | 2015 |
| Trycycler: consensus long-read assemblies for bacterial genomes RR Wick, LM Judd, LT Cerdeira, J Hawkey, G Méric, B Vezina, KL Wyres, ... Genome biology 22, 1-17, 2021 | 104 | 2021 |
| Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198 J Hawkey, S Le Hello, B Doublet, SA Granier, RS Hendriksen, WF Fricke, ... Microbial genomics 5 (7), 2019 | 96 | 2019 |
| Global phylogeography and evolutionary history of Shigella dysenteriae type 1 E Njamkepo, N Fawal, A Tran-Dien, J Hawkey, N Strockbine, C Jenkins, ... Nature microbiology 1 (4), 1-10, 2016 | 82 | 2016 |
| Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm J Hawkey, DJ Edwards, K Dimovski, L Hiley, H Billman-Jacobe, G Hogg, ... BMC genomics 14 (1), 1-15, 2013 | 67 | 2013 |
| Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection J Hawkey, DB Ascher, LM Judd, RR Wick, X Kostoulias, H Cleland, ... Microbial genomics 4 (3), 2018 | 64 | 2018 |
| Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward MB Schultz, DP Thanh, NT Do Hoan, RR Wick, DJ Ingle, J Hawkey, ... Microbial genomics 2 (3), 2016 | 57 | 2016 |
| Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem-and aminoglycoside-resistance genes and dispersion of ISAba1 M Hamidian, J Hawkey, R Wick, KE Holt, RM Hall Microbial genomics 5 (1), 2019 | 41 | 2019 |
| Impact of insertion sequences on convergent evolution of Shigella species J Hawkey, JM Monk, H Billman-Jacobe, B Palsson, KE Holt PLoS genetics 16 (7), e1008931, 2020 | 39 | 2020 |
| Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii CJ Boinett, AK Cain, J Hawkey, NT Do Hoang, NNT Khanh, DP Thanh, ... Microbial genomics 5 (2), 2019 | 37 | 2019 |
| Silent spread of mobile colistin resistance gene mcr-9.1 on IncHI2 ‘superplasmids’ in clinical carbapenem-resistant Enterobacterales N Macesic, LV Blakeway, JD Stewart, J Hawkey, KL Wyres, LM Judd, ... Clinical Microbiology and Infection 27 (12), 1856. e7-1856. e13, 2021 | 31 | 2021 |
| Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei J Hawkey, K Paranagama, KS Baker, RJ Bengtsson, FX Weill, ... Nature communications 12 (1), 2684, 2021 | 28 | 2021 |
| Genome sequence of Acinetobacter baumannii strain A1, an early example of antibiotic-resistant global clone 1 KE Holt, M Hamidian, JJ Kenyon, MT Wynn, J Hawkey, D Pickard, ... Genome announcements 3 (2), e00032-15, 2015 | 28 | 2015 |
| Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs RM Colquhoun, MB Hall, L Lima, LW Roberts, KM Malone, M Hunt, ... Genome biology 22, 1-30, 2021 | 27* | 2021 |
| Multiple genetic mutations associated with polymyxin resistance in Acinetobacter baumannii TP Lim, RTH Ong, PY Hon, J Hawkey, KE Holt, TH Koh, MLN Leong, ... Antimicrobial agents and chemotherapy 59 (12), 7899-7902, 2015 | 24 | 2015 |
| Genome sequence of Acinetobacter baumannii strain D36, an antibiotic-resistant isolate from lineage 2 of global clone 1 M Hamidian, J Hawkey, KE Holt, RM Hall Genome announcements 3 (6), e01478-15, 2015 | 18 | 2015 |
Kathryn HoltLSHTM & Monash UniversityVerified email at lshtm.ac.uk
