Johannes Zimmermann
Johannes Zimmermann
Junior Group Leader | Microverse Cluster | University Jena | Germany
Verified email at - Homepage
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Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells, and plasmablasts as hallmarks of severe COVID-19
JP Bernardes, N Mishra, F Tran, T Bahmer, L Best, JI Blase, D Bordoni, ...
Immunity 53 (6), 1296-1314. e9, 2020
BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities
E Bauer, J Zimmermann, F Baldini, I Thiele, C Kaleta
PLoS computational biology 13 (5), e1005544, 2017
Metabolic functions of gut microbes associate with efficacy of tumor necrosis factor antagonists in patients with inflammatory bowel diseases
K Aden, A Rehman, S Waschina, WH Pan, A Walker, M Lucio, AM Nunez, ...
Gastroenterology 157 (5), 1279-1292. e11, 2019
CeMbio - The Caenorhabditis elegans Microbiome Resource
P Dirksen, A Assié, J Zimmermann, F Zhang, AM Tietje, SA Marsh, ...
G3: Genes, Genomes, Genetics 10 (9), 3025-3039, 2020
gapseq: Informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models
J Zimmermann, C Kaleta, S Waschina
Genome biology 22 (1), 1-35, 2021
Natural C. elegans microbiota protects against infection via production of a cyclic lipopeptide of the viscosin group
KAB Kissoyan, M Drechsler, EL Stange, J Zimmermann, C Kaleta, ...
Current Biology 29 (6), 1030-1037. e5, 2019
The functional repertoire contained within the native microbiota of the model nematode Caenorhabditis elegans
J Zimmermann, N Obeng, W Yang, B Pees, C Petersen, S Waschina, ...
The ISME journal 14 (1), 26-38, 2020
Gut dysbiosis with bacilli dominance and accumulation of fermentation products precedes late-onset sepsis in preterm infants
S Graspeuntner, S Waschina, S Künzel, N Twisselmann, TK Rausch, ...
Clinical Infectious Diseases 69 (2), 268-277, 2019
In vitro interaction network of a synthetic gut bacterial community
AS Weiss, AG Burrichter, AC Durai Raj, A von Strempel, C Meng, ...
The ISME journal 16 (4), 1095-1109, 2022
Microbial regulation of hexokinase 2 links mitochondrial metabolism and cell death in colitis
F Hinrichsen, J Hamm, M Westermann, L Schröder, K Shima, N Mishra, ...
Cell metabolism 33 (12), 2355-2366. e8, 2021
A dietary carbohydrate – gut Parasutterella – human fatty acid biosynthesis metabolic axis in obesity and type 2 diabetes
L Henneke, K Schlicht, NA Andreani, T Hollstein, T Demetrowitsch, ...
Gut Microbes 14 (1), 2057778, 2022
The Inducible Response of the Nematode Caenorhabditis elegans to Members of Its Natural Microbiota Across Development and Adult Life
W Yang, C Petersen, B Pees, J Zimmermann, S Waschina, P Dirksen, ...
Frontiers in microbiology 10, 1793, 2019
Metastasis of pancreatic cancer: An uninflamed liver micromilieu controls cell growth and cancer stem cell properties by oxidative phosphorylation in pancreatic ductal …
A Fabian, S Stegner, L Miarka, J Zimmermann, L Lenk, S Rahn, J Buttlar, ...
Cancer letters 453, 95-106, 2019
Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome
H Petruschke, C Schori, S Canzler, S Riesbeck, A Poehlein, R Daniel, ...
Microbiome 9, 1-19, 2021
The complete genome of the tetrachloroethene-respiring Epsilonproteobacterium Sulfurospirillum halorespirans
T Goris, B Schenz, J Zimmermann, M Lemos, J Hackermüller, T Schubert, ...
Journal of Biotechnology 255, 33-36, 2017
WormJam: A consensus C. elegans Metabolic Reconstruction and Metabolomics Community and Workshop Series
J Hastings, A Mains, M Artal-Sanz, S Bergmann, BP Braeckman, J Bundy, ...
Worm 6 (2), e1373939, 2017
A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia
WT Scott Jr, S Benito-Vaquerizo, J Zimmermann, D Bajić, A Heinken, ...
PLOS Computational Biology 19 (8), e1011363, 2023
Precision nutrition in chronic inflammation
TJ Demetrowitsch, K Schlicht, C Knappe, J Zimmermann, J Jensen-Kroll, ...
Frontiers in Immunology 11, 587895, 2020
The Gene Expression Classifier ALLCatchR Identifies B-cell Precursor ALL Subtypes and Underlying Developmental Trajectories Across Age
T Beder, BT Hansen, AM Hartmann, J Zimmermann, E Amelunxen, ...
HemaSphere 7 (9), 2023
Für eine Geschichte der Systemwissenschaft
J Zimmermann
Beitrage des Instituts für Umweltsystemforschung der Universitat Osnabrück 53, 2010
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