| BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies K Yuan, T Sakoparnig, F Markowetz, N Beerenwinkel Genome biology 16, 1-16, 2015 | 142 | 2015 |
| Predicting cancer type from tumour DNA signatures KP Soh, E Szczurek, T Sakoparnig, N Beerenwinkel Genome medicine 9, 1-11, 2017 | 69 | 2017 |
| Whole genome phylogenies reflect the distributions of recombination rates for many bacterial species T Sakoparnig, C Field, E van Nimwegen Elife 10, e65366, 2021 | 59 | 2021 |
| Efficient sampling for Bayesian inference of conjunctive Bayesian networks T Sakoparnig, N Beerenwinkel Bioinformatics 28 (18), 2318-2324, 2012 | 30 | 2012 |
| Identification of constrained cancer driver genes based on mutation timing T Sakoparnig, P Fried, N Beerenwinkel PLoS computational biology 11 (1), e1004027, 2015 | 28 | 2015 |
| RNA-bound PGC-1α controls gene expression in liquid-like nuclear condensates J Pérez-Schindler, B Kohl, K Schneider-Heieck, AB Leuchtmann, ... Proceedings of the National Academy of Sciences 118 (36), e2105951118, 2021 | 13 | 2021 |
| Whole genome phylogenies reflect long-tailed distributions of recombination rates in many bacterial species T Sakoparnig, C Field, E van Nimwegen BioRxiv, 601914, 2019 | 12 | 2019 |
| Secondary use of routine data in hospitals: description of a scalable analytical platform based on a business intelligence system JA Roth, N Goebel, T Sakoparnig, S Neubauer, E Kuenzel-Pawlik, ... JAMIA open 1 (2), 172-177, 2018 | 10 | 2018 |
| Binding profiles of chromatin-modifying proteins are predictive for transcriptional activity and promoter-proximal pausing T Sakoparnig, T Kockmann, R Paro, C Beisel, N Beerenwinkel Journal of Computational Biology 19 (2), 126-138, 2012 | 10 | 2012 |
| Identifying cell states in single-cell RNA-seq data at statistically maximal resolution P Grobecker, T Sakoparnig, E van Nimwegen PLOS Computational Biology 20 (7), e1012224, 2024 | 3 | 2024 |
| Medical diagnoses showed low relatedness in an explorative mutual information analysis of 190,837 inpatient cases JA Roth, T Sakoparnig, S Neubauer, E Kuenzel-Pawlik, M Gerber, ... Journal of clinical epidemiology 109, 42-50, 2019 | 3 | 2019 |
| Supplementary figures for “BitPhylogeny: A probabilistic framework for reconstructing intra-tumor phylogenies” K Yuan, T Sakoparnig, F Markowetz, N Beerenwinkel | | 2014 |
| Computational Epigenomics and Progression of Cancer T Sakoparnig ETH Zurich, 2014 | | 2014 |
| Supplementary Information for “Identification of constrained cancer driver genes based on mutation timing” T Sakoparnig, P Fried, N Beerenwinkel | | |
Niko BeerenwinkelProfessor of Computational Biology, ETH ZurichVerified email at bsse.ethz.ch
