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Sakoparnig Thomas
Sakoparnig Thomas
Life Science Data Analyst, Biozentrum of University of Basel
Verified email at unibas.ch
Title
Cited by
Cited by
Year
BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies
K Yuan, T Sakoparnig, F Markowetz, N Beerenwinkel
Genome biology 16, 1-16, 2015
1422015
Predicting cancer type from tumour DNA signatures
KP Soh, E Szczurek, T Sakoparnig, N Beerenwinkel
Genome medicine 9, 1-11, 2017
692017
Whole genome phylogenies reflect the distributions of recombination rates for many bacterial species
T Sakoparnig, C Field, E van Nimwegen
Elife 10, e65366, 2021
592021
Efficient sampling for Bayesian inference of conjunctive Bayesian networks
T Sakoparnig, N Beerenwinkel
Bioinformatics 28 (18), 2318-2324, 2012
302012
Identification of constrained cancer driver genes based on mutation timing
T Sakoparnig, P Fried, N Beerenwinkel
PLoS computational biology 11 (1), e1004027, 2015
282015
RNA-bound PGC-1α controls gene expression in liquid-like nuclear condensates
J Pérez-Schindler, B Kohl, K Schneider-Heieck, AB Leuchtmann, ...
Proceedings of the National Academy of Sciences 118 (36), e2105951118, 2021
132021
Whole genome phylogenies reflect long-tailed distributions of recombination rates in many bacterial species
T Sakoparnig, C Field, E van Nimwegen
BioRxiv, 601914, 2019
122019
Secondary use of routine data in hospitals: description of a scalable analytical platform based on a business intelligence system
JA Roth, N Goebel, T Sakoparnig, S Neubauer, E Kuenzel-Pawlik, ...
JAMIA open 1 (2), 172-177, 2018
102018
Binding profiles of chromatin-modifying proteins are predictive for transcriptional activity and promoter-proximal pausing
T Sakoparnig, T Kockmann, R Paro, C Beisel, N Beerenwinkel
Journal of Computational Biology 19 (2), 126-138, 2012
102012
Identifying cell states in single-cell RNA-seq data at statistically maximal resolution
P Grobecker, T Sakoparnig, E van Nimwegen
PLOS Computational Biology 20 (7), e1012224, 2024
32024
Medical diagnoses showed low relatedness in an explorative mutual information analysis of 190,837 inpatient cases
JA Roth, T Sakoparnig, S Neubauer, E Kuenzel-Pawlik, M Gerber, ...
Journal of clinical epidemiology 109, 42-50, 2019
32019
Supplementary figures for “BitPhylogeny: A probabilistic framework for reconstructing intra-tumor phylogenies”
K Yuan, T Sakoparnig, F Markowetz, N Beerenwinkel
2014
Computational Epigenomics and Progression of Cancer
T Sakoparnig
ETH Zurich, 2014
2014
Supplementary Information for “Identification of constrained cancer driver genes based on mutation timing”
T Sakoparnig, P Fried, N Beerenwinkel
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Articles 1–14