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Denise Kühnert
Denise Kühnert
Robert Koch Institut & Max Planck Institute of Geoanthropology
Verified email at shh.mpg.de
Title
Cited by
Cited by
Year
BEAST 2: a software platform for Bayesian evolutionary analysis
R Bouckaert, J Heled, D Kühnert, T Vaughan, CH Wu, D Xie, MA Suchard, ...
PLoS computational biology 10 (4), e1003537, 2014
63402014
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
30432019
Birth–death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)
T Stadler, D Kühnert, S Bonhoeffer, AJ Drummond
Proceedings of the National Academy of Sciences, 2012
5422012
Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague
MA Spyrou, RI Tukhbatova, CC Wang, AA Valtueña, AK Lankapalli, ...
Nature communications 9 (1), 2234, 2018
2232018
The contrasting phylodynamics of human influenza B viruses
D Vijaykrishna, EC Holmes, U Joseph, M Fourment, YCF Su, R Halpin, ...
Elife 4, e05055, 2015
2092015
Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster
N Arora, VJ Schuenemann, G Jäger, A Peltzer, A Seitz, A Herbig, ...
Nature microbiology 2 (1), 1-6, 2016
1712016
Phylodynamics with migration: a computational framework to quantify population structure from genomic data
D Kühnert, T Stadler, TG Vaughan, AJ Drummond
Molecular biology and evolution 33 (8), 2102-2116, 2016
1532016
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ...
Briefings in bioinformatics 22 (2), 642-663, 2021
1492021
Efficient Bayesian inference under the structured coalescent
TG Vaughan, D Kühnert, A Popinga, D Welch, AJ Drummond
Bioinformatics 30 (16), 2272-2279, 2014
1412014
Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model
D Kühnert, T Stadler, TG Vaughan, AJ Drummond
J. R. Soc. Interface 6 May 2014, http://rsif.royalsocietypublishing.org …, 2013
1372013
Neolithic and medieval virus genomes reveal complex evolution of hepatitis B
B Krause-Kyora, J Susat, FM Key, D Kühnert, E Bosse, A Immel, C Rinne, ...
Elife 7, e36666, 2018
1302018
The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology
CJ Meehan, P Moris, TA Kohl, J Pečerska, S Akter, M Merker, C Utpatel, ...
EBioMedicine 37, 410-416, 2018
1252018
Taming the BEAST—A community teaching material resource for BEAST 2
J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ...
Systematic biology 67 (1), 170-174, 2018
1092018
Insights into the Early Epidemic Spread of Ebola in Sierra Leone Provided by Viral Sequence Data
T Stadler, D Kühnert, DA Rasmussen, L du Plessis
PLOS Currents Outbreaks, 2014
1092014
Influenza A Virus Migration and Persistence in North American Wild Birds
J Bahl, S Krauss, D Kühnert, M Fourment, G Raven, et al
PLoS Pathogens 9 (8), e1003570, 2013
1072013
Phylogenetic and epidemic modeling of rapidly evolving infectious diseases
D Kühnert, CH Wu, AJ Drummond
Infection, genetics and evolution 11 (8), 1825-1841, 2011
1052011
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process
FM Key, C Posth, LR Esquivel-Gomez, R Hübler, MA Spyrou, ...
Nature ecology & evolution 4 (3), 324-333, 2020
982020
The source of the Black Death in fourteenth-century central Eurasia
MA Spyrou, L Musralina, GA Gnecchi Ruscone, A Kocher, PG Borbone, ...
Nature 606 (7915), 718-724, 2022
862022
In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance
V Dengler Haunreiter, M Boumasmoud, N Häffner, D Wipfli, N Leimer, ...
Nature communications 10 (1), 1149, 2019
792019
Ten millennia of hepatitis B virus evolution
A Kocher, L Papac, R Barquera, FM Key, MA Spyrou, R Hübler, ...
Science 374 (6564), 182-188, 2021
782021
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