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Andrea Maria Chiariello
Andrea Maria Chiariello
Università degli Studi di Napoli Federico II
Verified email at na.infn.it
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Cited by
Year
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation
J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ...
Molecular systems biology 11 (12), 852, 2015
3592015
Polymer physics of chromosome large-scale 3D organisation
AM Chiariello, C Annunziatella, S Bianco, A Esposito, M Nicodemi
Scientific reports 6 (1), 29775, 2016
1842016
Polymer physics predicts the effects of structural variants on chromatin architecture
S Bianco, DG Lupiáñez, AM Chiariello, C Annunziatella, K Kraft, ...
Nature genetics 50 (5), 662-667, 2018
1752018
Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains
AM Oudelaar, JOJ Davies, LLP Hanssen, JM Telenius, R Schwessinger, ...
Nature genetics 50 (12), 1744-1751, 2018
1712018
Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis
BK Kragesteen, M Spielmann, C Paliou, V Heinrich, R Schöpflin, ...
Nature genetics 50 (10), 1463-1473, 2018
1642018
Preformed chromatin topology assists transcriptional robustness of Shh during limb development
C Paliou, P Guckelberger, R Schöpflin, V Heinrich, A Esposito, ...
Proceedings of the National Academy of Sciences 116 (25), 12390-12399, 2019
1342019
Cell-type specialization is encoded by specific chromatin topologies
W Winick-Ng, A Kukalev, I Harabula, L Zea-Redondo, D Szabó, M Meijer, ...
Nature 599 (7886), 684-691, 2021
1122021
CTCF mediates dosage-and sequence-context-dependent transcriptional insulation by forming local chromatin domains
H Huang, Q Zhu, A Jussila, Y Han, B Bintu, C Kern, M Conte, Y Zhang, ...
Nature genetics 53 (7), 1064-1074, 2021
912021
Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation
M Conte, L Fiorillo, S Bianco, AM Chiariello, A Esposito, M Nicodemi
Nature communications 11 (1), 3289, 2020
882020
Release of paused RNA polymerase II at specific loci favors DNA double-strand-break formation and promotes cancer translocations
GI Dellino, F Palluzzi, AM Chiariello, R Piccioni, S Bianco, L Furia, ...
Nature genetics 51 (6), 1011-1023, 2019
882019
Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells
M Barbieri, SQ Xie, E Torlai Triglia, AM Chiariello, S Bianco, I de Santiago, ...
Nature structural & molecular biology 24 (6), 515-524, 2017
872017
Predicting chromatin architecture from models of polymer physics
S Bianco, AM Chiariello, C Annunziatella, A Esposito, M Nicodemi
Chromosome Research 25, 25-34, 2017
502017
Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding
M Conte, E Irani, AM Chiariello, A Abraham, S Bianco, A Esposito, ...
Nature communications 13 (1), 4070, 2022
402022
Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin
L Fiorillo, F Musella, M Conte, R Kempfer, AM Chiariello, S Bianco, ...
Nature methods 18 (5), 482-490, 2021
382021
A dynamic folded hairpin conformation is associated with α-globin activation in erythroid cells
AM Chiariello, S Bianco, AM Oudelaar, A Esposito, C Annunziatella, ...
Cell Reports 30 (7), 2125-2135. e5, 2020
372020
Computational approaches from polymer physics to investigate chromatin folding
S Bianco, AM Chiariello, M Conte, A Esposito, L Fiorillo, F Musella, ...
Current opinion in cell biology 64, 10-17, 2020
322020
Structure of the human chromosome interaction network
S Sarnataro, AM Chiariello, A Esposito, A Prisco, M Nicodemi
PLoS One 12 (11), e0188201, 2017
322017
Molecular dynamics simulations of the strings and binders switch model of chromatin
C Annunziatella, AM Chiariello, A Esposito, S Bianco, L Fiorillo, ...
Methods 142, 81-88, 2018
292018
Polymer models of the hierarchical folding of the Hox-B chromosomal locus
C Annunziatella, AM Chiariello, S Bianco, M Nicodemi
Physical Review E 94 (4), 042402, 2016
252016
Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes
AR Ringel, Q Szabo, AM Chiariello, K Chudzik, R Schöpflin, P Rothe, ...
Cell 185 (20), 3689-3704. e21, 2022
232022
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