David A Rasmussen
Title
Cited by
Cited by
Year
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
7162019
Inference for nonlinear epidemiological models using genealogies and time series
DA Rasmussen, O Ratmann, K Koelle
PLoS Comput Biol 7 (8), e1002136, 2011
1622011
Sunflower domestication alleles support single domestication center in eastern North America
BK Blackman, M Scascitelli, NC Kane, HH Luton, DA Rasmussen, RA Bye, ...
Proceedings of the National Academy of Sciences 108 (34), 14360-14365, 2011
1152011
Phylodynamic inference for structured epidemiological models
DA Rasmussen, EM Volz, K Koelle
PLoS Comput Biol 10 (4), e1003570, 2014
922014
Contributions of flowering time genes to sunflower domestication and improvement
BK Blackman, DA Rasmussen, JL Strasburg, AR Raduski, JM Burke, ...
Genetics 187 (1), 271-287, 2011
862011
One size fits all? Molecular evidence for a commonly inherited petal identity program in Ranunculales
DA Rasmussen, EM Kramer, EA Zimmer
American Journal of Botany 96 (1), 96-109, 2009
862009
Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data
T Stadler, D Kühnert, DA Rasmussen, L du Plessis
PLoS currents 6, 2014
842014
What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)
DA Rasmussen, MAF Noor
Bmc Genomics 10 (1), 1-9, 2009
712009
Reconciling phylodynamics with epidemiology: the case of dengue virus in southern Vietnam
DA Rasmussen, MF Boni, K Koelle
Molecular biology and evolution 31 (2), 258-271, 2014
562014
Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison
O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, ...
Molecular biology and evolution 34 (1), 185-203, 2017
542017
The effects of a deleterious mutation load on patterns of influenza A/H3N2's antigenic evolution in humans
K Koelle, DA Rasmussen
Elife 4, e07361, 2015
502015
The structured coalescent and its approximations
NF Müller, DA Rasmussen, T Stadler
Molecular biology and evolution 34 (11), 2970-2981, 2017
472017
Taming the BEAST—A community teaching material resource for BEAST 2
J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ...
Systematic biology 67 (1), 170-174, 2018
442018
Rates of coalescence for common epidemiological models at equilibrium
K Koelle, DA Rasmussen
Journal of the Royal Society Interface 9 (70), 997-1007, 2012
412012
MASCOT: parameter and state inference under the marginal structured coalescent approximation
NF Müller, D Rasmussen, T Stadler
Bioinformatics 34 (22), 3843-3848, 2018
382018
Origin, imports and exports of HIV-1 subtype C in South Africa: A historical perspective
E Wilkinson, D Rasmussen, O Ratmann, T Stadler, S Engelbrecht, ...
Infection, Genetics and Evolution 46, 200-208, 2016
262016
Estimating epidemic incidence and prevalence from genomic data
TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ...
Molecular biology and evolution 36 (8), 1804-1816, 2019
232019
Phylodynamics on local sexual contact networks
DA Rasmussen, R Kouyos, HF Günthard, T Stadler
PLoS computational biology 13 (3), e1005448, 2017
202017
A dimensionless number for understanding the evolutionary dynamics of antigenically variable RNA viruses
K Koelle, O Ratmann, DA Rasmussen, V Pasour, J Mattingly
Proceedings of the Royal Society B: Biological Sciences 278 (1725), 3723-3730, 2011
152011
Tracking external introductions of HIV using phylodynamics reveals a major source of infections in rural KwaZulu-Natal, South Africa
DA Rasmussen, E Wilkinson, A Vandormael, F Tanser, D Pillay, T Stadler, ...
Virus evolution 4 (2), vey037, 2018
132018
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Articles 1–20