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David A Rasmussen
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
13742019
Inference for nonlinear epidemiological models using genealogies and time series
DA Rasmussen, O Ratmann, K Koelle
PLoS computational biology 7 (8), e1002136, 2011
1642011
Sunflower domestication alleles support single domestication center in eastern North America
BK Blackman, M Scascitelli, NC Kane, HH Luton, DA Rasmussen, RA Bye, ...
proceedings of the National Academy of Sciences 108 (34), 14360-14365, 2011
1312011
Phylodynamic inference for structured epidemiological models
DA Rasmussen, EM Volz, K Koelle
PLoS computational biology 10 (4), e1003570, 2014
1012014
Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data
T Stadler, D Kühnert, DA Rasmussen, L du Plessis
PLoS currents 6, 2014
952014
Contributions of flowering time genes to sunflower domestication and improvement
BK Blackman, DA Rasmussen, JL Strasburg, AR Raduski, JM Burke, ...
Genetics 187 (1), 271-287, 2011
922011
One size fits all? Molecular evidence for a commonly inherited petal identity program in Ranunculales
DA Rasmussen, EM Kramer, EA Zimmer
American Journal of Botany 96 (1), 96-109, 2009
912009
What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)
DA Rasmussen, MAF Noor
Bmc Genomics 10 (1), 1-9, 2009
722009
The structured coalescent and its approximations
NF Müller, DA Rasmussen, T Stadler
Molecular biology and evolution 34 (11), 2970-2981, 2017
682017
Taming the BEAST—A community teaching material resource for BEAST 2
J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ...
Systematic biology 67 (1), 170-174, 2018
652018
The effects of a deleterious mutation load on patterns of influenza A/H3N2's antigenic evolution in humans
K Koelle, DA Rasmussen
Elife 4, e07361, 2015
642015
Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison
O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, ...
Molecular biology and evolution 34 (1), 185-203, 2017
592017
Reconciling phylodynamics with epidemiology: the case of dengue virus in southern Vietnam
DA Rasmussen, MF Boni, K Koelle
Molecular biology and evolution 31 (2), 258-271, 2014
582014
MASCOT: parameter and state inference under the marginal structured coalescent approximation
NF Müller, D Rasmussen, T Stadler
Bioinformatics 34 (22), 3843-3848, 2018
552018
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa
EWMGHTJESRLDCDPMDARARNZAKSASOAKSAPASKAMOAOOOAHAAAASAEOOAENAAAFVAKAGAJTAAYAKK ...
Science 374 (6566), 423-431, 2021
502021
Rates of coalescence for common epidemiological models at equilibrium
K Koelle, DA Rasmussen
Journal of the Royal Society Interface 9 (70), 997-1007, 2012
452012
Estimating epidemic incidence and prevalence from genomic data
TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ...
Molecular biology and evolution 36 (8), 1804-1816, 2019
362019
Origin, imports and exports of HIV-1 subtype C in South Africa: A historical perspective
E Wilkinson, D Rasmussen, O Ratmann, T Stadler, S Engelbrecht, ...
Infection, Genetics and Evolution 46, 200-208, 2016
292016
Aphid transmission of Potyvirus: the largest plant-infecting RNA virus genus
KR Gadhave, S Gautam, DA Rasmussen, R Srinivasan
Viruses 12 (7), 773, 2020
282020
Phylodynamics on local sexual contact networks
DA Rasmussen, R Kouyos, HF Günthard, T Stadler
PLoS computational biology 13 (3), e1005448, 2017
252017
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