| Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ... Cell 184 (1), 64-75. e11, 2021 | 1157 | 2021 |
| Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ... The Lancet Infectious Diseases 22 (1), 35-42, 2022 | 885 | 2022 |
| ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads M Hunt, AE Mather, L Sánchez-Busó, AJ Page, J Parkhill, JA Keane, ... Microbial genomics 3 (10), 2017 | 631 | 2017 |
| A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ... Genome research 23 (4), 653-664, 2013 | 531 | 2013 |
| Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter-and intracontinental transmission events VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ... Nature genetics 47 (6), 632-639, 2015 | 503 | 2015 |
| Dense genomic sampling identifies highways of pneumococcal recombination C Chewapreecha, SR Harris, NJ Croucher, C Turner, P Marttinen, ... Nature genetics 46 (3), 305-309, 2014 | 417 | 2014 |
| Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts AE Mather, SWJ Reid, DJ Maskell, J Parkhill, MC Fookes, SR Harris, ... Science 341 (6153), 1514-1517, 2013 | 409 | 2013 |
| Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes C Chewapreecha, P Marttinen, NJ Croucher, SJ Salter, SR Harris, ... PLoS Genet 10 (8), e1004547, 2014 | 237 | 2014 |
| A current perspective on antimicrobial resistance in Southeast Asia RM Zellweger, J Carrique-Mas, D Limmathurotsakul, NPJ Day, ... Journal of Antimicrobial Chemotherapy 72 (11), 2963-2972, 2017 | 202 | 2017 |
| Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings NA Feasey, J Hadfield, KH Keddy, TJ Dallman, J Jacobs, X Deng, ... Nature Genetics, 2016 | 200 | 2016 |
| Microevolution of Monophasic Salmonella Typhimurium during Epidemic, United Kingdom, 2005–2010 L Petrovska, AE Mather, M AbuOun, P Branchu, SR Harris, T Connor, ... Emerging infectious diseases 22 (4), 617, 2016 | 183 | 2016 |
| Global and regional dissemination and evolution of Burkholderia pseudomallei C Chewapreecha, MTG Holden, M Vehkala, N Välimäki, Z Yang, ... Nature Microbiology 2, 16263, 2017 | 176 | 2017 |
| An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid VK Wong, S Baker, TR Connor, D Pickard, AJ Page, J Dave, N Murphy, ... Nature communications 7 (1), 1-11, 2016 | 158 | 2016 |
| Integrated view of Vibrio cholerae in the Americas D Domman, ML Quilici, MJ Dorman, E Njamkepo, A Mutreja, AE Mather, ... Science 358 (6364), 789-793, 2017 | 157 | 2017 |
| The effect of genetic structure on molecular dating and tests for temporal signal GGR Murray, F Wang, EM Harrison, GK Paterson, AE Mather, SR Harris, ... Methods in Ecology and Evolution 7 (1), 80-89, 2016 | 134 | 2016 |
| Salmonella enterica serotype 4,[5], 12: i:-in swine in the United States Midwest: an emerging multidrug resistant clone E Elnekave, S Hong, AE Mather, D Boxrud, AJ Taylor, V Lappi, ... Clinical Infectious Diseases, 2017 | 118 | 2017 |
| Anti-inflammatories in Alzheimer’s disease-potential therapy or spurious correlate? J Rivers-Auty, AE Mather, R Peters, CB Lawrence, D Brough Brain Communications, 2020 | 103 | 2020 |
| CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes DJ Baker, A Aydin, T Le-Viet, GL Kay, S Rudder, L de Oliveira Martins, ... Genome medicine 13 (1), 1-11, 2021 | 96 | 2021 |
| An ecological approach to assessing the epidemiology of antimicrobial resistance in animal and human populations AE Mather, L Matthews, DJ Mellor, R Reeve, MJ Denwood, P Boerlin, ... Proceedings of the Royal Society B: Biological Sciences, rspb20111975, 2011 | 90 | 2011 |
| Global phylogeography and evolutionary history of Shigella dysenteriae type 1 E Njamkepo, N Fawal, A Tran-Dien, J Hawkey, N Strockbine, C Jenkins, ... Nature Microbiology 1, 16027, 2016 | 87 | 2016 |
