Victor Greiff
Victor Greiff
Associate Professor, Laboratory for Computational and Systems Immunology, University of Oslo
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Zitiert von
Zitiert von
Hopfield networks is all you need
H Ramsauer, B Schäfl, J Lehner, P Seidl, M Widrich, T Adler, L Gruber, ...
arXiv preprint arXiv:2008.02217, 2020
Bioinformatic and statistical analysis of adaptive immune repertoires
V Greiff, E Miho, U Menzel, ST Reddy
Trends in immunology 36 (11), 738-749, 2015
A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status
V Greiff, P Bhat, SC Cook, U Menzel, W Kang, ST Reddy
Genome medicine 7, 1-15, 2015
Computational strategies for dissecting the high-dimensional complexity of adaptive immune repertoires
E Miho, A Yermanos, CR Weber, CT Berger, ST Reddy, V Greiff
Frontiers in immunology 9, 224, 2018
Systems analysis reveals high genetic and antigen-driven predetermination of antibody repertoires throughout B cell development
V Greiff, U Menzel, E Miho, C Weber, R Riedel, S Cook, A Valai, T Lopes, ...
Cell reports 19 (7), 1467-1478, 2017
Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data
F Rubelt, CE Busse, SAC Bukhari, JP Bürckert, E Mariotti-Ferrandiz, ...
Nature immunology 18 (12), 1274-1278, 2017
Mucosal or systemic microbiota exposures shape the B cell repertoire
H Li, JP Limenitakis, V Greiff, B Yilmaz, O Schären, C Urbaniak, M Zünd, ...
Nature 584 (7820), 274-278, 2020
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding
R Akbar, PA Robert, M Pavlović, JR Jeliazkov, I Snapkov, A Slabodkin, ...
Cell Reports 34 (11), 2021
Resident memory CD8 T cells persist for years in human small intestine
R Bartolomé-Casado, OJB Landsverk, SK Chauhan, L Richter, D Phung, ...
Journal of Experimental Medicine 216 (10), 2412-2426, 2019
Modern hopfield networks and attention for immune repertoire classification
M Widrich, B Schäfl, M Pavlović, H Ramsauer, L Gruber, M Holzleitner, ...
Advances in neural information processing systems 33, 18832-18845, 2020
Large-scale network analysis reveals the sequence space architecture of antibody repertoires
E Miho, R Roškar, V Greiff, ST Reddy
Nature communications 10 (1), 1321, 2019
Learning the high-dimensional immunogenomic features that predict public and private antibody repertoires
V Greiff, CR Weber, J Palme, U Bodenhofer, E Miho, U Menzel, ST Reddy
The Journal of Immunology 199 (8), 2985-2997, 2017
Animal immunization, in vitro display technologies, and machine learning for antibody discovery
AH Laustsen, V Greiff, A Karatt-Vellatt, S Muyldermans, TP Jenkins
Trends in Biotechnology 39 (12), 1263-1273, 2021
In silico proof of principle of machine learning-based antibody design at unconstrained scale
R Akbar, PA Robert, CR Weber, M Widrich, R Frank, M Pavlović, ...
MAbs 14 (1), 2031482, 2022
Single-cell BCR and transcriptome analysis after influenza infection reveals spatiotemporal dynamics of antigen-specific B cells
NR Mathew, JK Jayanthan, IV Smirnov, JL Robinson, H Axelsson, ...
Cell reports 35 (12), 2021
High-throughput antibody engineering in mammalian cells by CRISPR/Cas9-mediated homology-directed mutagenesis
DM Mason, CR Weber, C Parola, SM Meng, V Greiff, WJ Kelton, ...
Nucleic acids research 46 (14), 7436-7449, 2018
Immunoglobulin germline gene variation and its impact on human disease
I Mikocziova, V Greiff, LM Sollid
Genes & Immunity 22 (4), 205-217, 2021
Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies
R Akbar, H Bashour, P Rawat, PA Robert, E Smorodina, TS Cotet, ...
MAbs 14 (1), 2008790, 2022
Mining adaptive immune receptor repertoires for biological and clinical information using machine learning
V Greiff, G Yaari, LG Cowell
Current Opinion in Systems Biology 24, 109-119, 2020
Quantitative assessment of the robustness of next-generation sequencing of antibody variable gene repertoires from immunized mice
V Greiff, U Menzel, U Haessler, SC Cook, S Friedensohn, TA Khan, ...
BMC immunology 15, 1-14, 2014
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