Victor Greiff
Victor Greiff
Associate Professor, Laboratory for Computational and Systems Immunology, University of Oslo
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Zitiert von
Zitiert von
Hopfield networks is all you need
H Ramsauer, B Schäfl, J Lehner, P Seidl, M Widrich, T Adler, L Gruber, ...
arXiv preprint arXiv:2008.02217, 2020
Bioinformatic and statistical analysis of adaptive immune repertoires
V Greiff, E Miho, U Menzel, ST Reddy
Trends in immunology 36 (11), 738-749, 2015
A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status
V Greiff, P Bhat, SC Cook, U Menzel, W Kang, ST Reddy
Genome medicine 7 (1), 1-15, 2015
Computational strategies for dissecting the high-dimensional complexity of adaptive immune repertoires
E Miho, A Yermanos, CR Weber, CT Berger, ST Reddy, V Greiff
Frontiers in immunology 9, 224, 2018
Systems analysis reveals high genetic and antigen-driven predetermination of antibody repertoires throughout B cell development
V Greiff, U Menzel, E Miho, C Weber, R Riedel, S Cook, A Valai, T Lopes, ...
Cell reports 19 (7), 1467-1478, 2017
Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data
F Rubelt, CE Busse, SAC Bukhari, JP Bürckert, E Mariotti-Ferrandiz, ...
Nature immunology 18 (12), 1274-1278, 2017
Mucosal or systemic microbiota exposures shape the B cell repertoire
H Li, JP Limenitakis, V Greiff, B Yilmaz, O Schären, C Urbaniak, M Zünd, ...
Nature 584 (7820), 274-278, 2020
Large-scale network analysis reveals the sequence space architecture of antibody repertoires
E Miho, R Roškar, V Greiff, ST Reddy
Nature communications 10 (1), 1321, 2019
Resident memory CD8 T cells persist for years in human small intestine
R Bartolomé-Casado, OJB Landsverk, SK Chauhan, L Richter, D Phung, ...
Journal of Experimental Medicine 216 (10), 2412-2426, 2019
Learning the high-dimensional immunogenomic features that predict public and private antibody repertoires
V Greiff, CR Weber, J Palme, U Bodenhofer, E Miho, U Menzel, ST Reddy
The Journal of Immunology 199 (8), 2985-2997, 2017
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding
R Akbar, PA Robert, M Pavlović, JR Jeliazkov, I Snapkov, A Slabodkin, ...
Cell Reports 34 (11), 108856, 2021
Modern hopfield networks and attention for immune repertoire classification
M Widrich, B Schäfl, M Pavlović, H Ramsauer, L Gruber, M Holzleitner, ...
Advances in Neural Information Processing Systems 33, 18832-18845, 2020
High-throughput antibody engineering in mammalian cells by CRISPR/Cas9-mediated homology-directed mutagenesis
DM Mason, CR Weber, C Parola, SM Meng, V Greiff, WJ Kelton, ...
Nucleic acids research 46 (14), 7436-7449, 2018
Comprehensive evaluation and optimization of amplicon library preparation methods for high-throughput antibody sequencing
U Menzel, V Greiff, TA Khan, U Haessler, I Hellmann, S Friedensohn, ...
PloS one 9 (5), e96727, 2014
Quantitative assessment of the robustness of next-generation sequencing of antibody variable gene repertoires from immunized mice
V Greiff, U Menzel, U Haessler, SC Cook, S Friedensohn, TA Khan, ...
BMC immunology 15, 1-14, 2014
Animal immunization, in vitro display technologies, and machine learning for antibody discovery
AH Laustsen, V Greiff, A Karatt-Vellatt, S Muyldermans, TP Jenkins
Trends in Biotechnology 39 (12), 1263-1273, 2021
Single-cell BCR and transcriptome analysis after influenza infection reveals spatiotemporal dynamics of antigen-specific B cells
NR Mathew, JK Jayanthan, IV Smirnov, JL Robinson, H Axelsson, ...
Cell reports 35 (12), 109286, 2021
Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires
AJ Brown, I Snapkov, R Akbar, M Pavlović, E Miho, GK Sandve, V Greiff
Molecular Systems Design & Engineering 4 (4), 701-736, 2019
Inferred allelic variants of immunoglobulin receptor genes: a system for their evaluation, documentation, and naming
M Ohlin, C Scheepers, M Corcoran, WD Lees, CE Busse, D Bagnara, ...
Frontiers in immunology, 435, 2019
Discrete populations of isotype-switched memory B lymphocytes are maintained in murine spleen and bone marrow
R Riedel, R Addo, M Ferreira-Gomes, GA Heinz, F Heinrich, J Kummer, ...
Nature communications 11 (1), 2570, 2020
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