Jan Funke
Jan Funke
HHMI Janelia Research Campus
Verified email at janelia.hhmi.org - Homepage
Title
Cited by
Cited by
Year
Large Scale Image Segmentation with Structured Loss based Deep Learning for Connectome Reconstruction
J Funke, FD Tschopp, W Grisaitis, A Sheridan, C Singh, S Saalfeld, ...
arXiv preprint arXiv:1709.02974, 2017
99*2017
Efficient automatic 3D-reconstruction of branching neurons from EM data
J Funke, B Andres, FA Hamprecht, A Cardona, M Cook
2012 IEEE Conference on Computer Vision and Pattern Recognition, 1004-1011, 2012
822012
Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems
F Tschopp, JNP Martel, SC Turaga, M Cook, J Funke
ISBI, 1225-1228, 2016
512016
Accurate and linear time pose estimation from points and lines
A Vakhitov, J Funke, F Moreno-Noguer
European Conference on Computer Vision, 583-599, 2016
432016
Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine
F Jug, T Pietzsch, D Kainmüller, J Funke, M Kaiser, E van Nimwegen, ...
Bayesian and grAphical Models for Biomedical Imaging, 25-36, 2014
362014
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain
L Heinrich, J Funke, C Pape, J Nunez-Iglesias, S Saalfeld
International Conference on Medical Image Computing and Computer-Assisted …, 2018
302018
Learning to segment: Training hierarchical segmentation under a topological loss
J Funke, FA Hamprecht, C Zhang
International Conference on Medical Image Computing and Computer-Assisted …, 2015
232015
A framework for evaluating visual slam
J Funke, T Pietzsch
Proceedings of the British Machine Vision Conference (BMVC) 6, 2009
222009
Reconstruction of motor control circuits in adult Drosophila using automated transmission electron microscopy
JT Maniates-Selvin, DGC Hildebrand, BJ Graham, AT Kuan, LA Thomas, ...
bioRxiv, 2020
182020
Segmented anisotropic ssTEM dataset of neural tissue
S Gerhard, J Funke, J Martel, A Cardona, R Fetter
figshare, 0-0, 2013
182013
Who is talking to whom: synaptic partner detection in anisotropic volumes of insect brain
A Kreshuk, J Funke, A Cardona, FA Hamprecht
International Conference on Medical Image Computing and Computer-Assisted …, 2015
162015
Candidate sampling for neuron reconstruction from anisotropic electron microscopy volumes
J Funke, JNP Martel, S Gerhard, B Andres, DC Cireşan, A Giusti, ...
International Conference on Medical Image Computing and Computer-Assisted …, 2014
152014
Dense neuronal reconstruction through X-ray holographic nano-tomography
AT Kuan, JS Phelps, LA Thomas, TM Nguyen, J Han, CL Chen, ...
Nature Neuroscience, 1-7, 2020
142020
Ted: A tolerant edit distance for segmentation evaluation
J Funke, J Klein, F Moreno-Noguer, A Cardona, M Cook
Methods 115, 119-127, 2017
132017
Automatic detection of synaptic partners in a whole-brain Drosophila EM dataset
J Buhmann, A Sheridan, S Gerhard, R Krause, T Nguyen, L Heinrich, ...
bioRxiv, 2019
122019
Synaptic partner prediction from point annotations in insect brains
J Buhmann, R Krause, RC Lentini, N Eckstein, M Cook, S Turaga, J Funke
International Conference on Medical Image Computing and Computer-Assisted …, 2018
122018
Analyzing image segmentation for connectomics
SM Plaza, J Funke
Frontiers in neural circuits 12, 102, 2018
112018
Multi-hypothesis crf-segmentation of neural tissue in anisotropic em volumes
J Funke, B Andres, F Hamprecht, A Cardona, M Cook
arXiv preprint arXiv:1109.2449, 2011
52011
Segmented anisotropic ssTEM dataset of neural tissue (2013)
S Gerhard, J Funke, J Martel, A Cardona, R Fetter
URL http://dx. doi. org/10.6084/m9. figshare 856713, 0
5
Automatic whole cell organelle segmentation in volumetric electron microscopy
L Heinrich, D Bennett, D Ackerman, W Park, J Bogovic, N Eckstein, ...
bioRxiv, 2020
42020
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Articles 1–20