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David R. Penas
David R. Penas
Postdoctoral researcher, MBG-CSIC
Verified email at csic.es - Homepage
Title
Cited by
Cited by
Year
Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy
DR Penas, P González, JA Egea, R Doallo, JR Banga
BMC bioinformatics 18, 1-24, 2017
722017
Enhanced parallel differential evolution algorithm for problems in computational systems biology
DR Penas, JR Banga, P González, R Doallo
Applied Soft Computing 33, 86-99, 2015
612015
A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology
D Teijeiro, XC Pardo, DR Penas, P González, JR Banga, R Doallo
Cluster Computing 20, 1937-1950, 2017
232017
Parallel metaheuristics in computational biology: An asynchronous cooperative enhanced scatter search method
DR Penas, P González, JA Egea, JR Banga, R Doallo
Procedia Computer Science 51, 630-639, 2015
232015
A parallel metaheuristic for large mixed-integer dynamic optimization problems, with applications in computational biology
DR Penas, D Henriques, P González, R Doallo, J Saez-Rodriguez, ...
PLoS One 12 (8), e0182186, 2017
202017
Using the cloud for parameter estimation problems: comparing Spark vs MPI with a case-study
P González, XC Pardo, DR Penas, D Teijeiro, JR Banga, R Doallo
2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2017
182017
Evaluation of parallel differential evolution implementations on MapReduce and Spark
D Teijeiro, XC Pardo, DR Penas, P González, JR Banga, R Doallo
Euro-Par 2016: Parallel Processing Workshops: Euro-Par 2016 International …, 2017
142017
Computational advances in polynomial optimization: RAPOSa, a freely available global solver
B González-Rodríguez, J Ossorio-Castillo, J González-Díaz, ...
Journal of Global Optimization, 1-28, 2022
132022
A parallel differential evolution algorithm for parameter estimation in dynamic models of biological systems
DR Penas, JR Banga, P González, R Doallo
8th international conference on practical applications of computational …, 2014
122014
A new two‐phase heuristic for a problem of food distribution with compartmentalized trucks and trailers
L Davila‐Pena, D R. Penas, B Casas‐Méndez
International Transactions in Operational Research 30 (2), 1031-1064, 2023
42023
A study of semantic proximity between archetype terms based on SNOMED CT relationships
JL Allones, D Penas, M Taboada, D Martinez, S Tellado
International Workshop on Process-oriented Information Systems in Healthcare …, 2012
42012
Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology
P González, P Argüeso-Alejandro, DR Penas, XC Pardo, ...
The Journal of Supercomputing 75, 3471-3498, 2019
32019
Enhanced global optimization methods applied to complex fisheries stock assessment models
DR Penas, A Gómez, BB Fraguela, MJ Martín, S Cerviño
Applied Soft Computing 77, 50-66, 2019
32019
Multimethod optimization in the cloud: A case‐study in systems biology modelling
P González, DR Penas, XC Pardo, JR Banga, R Doallo
Concurrency and Computation: Practice and Experience 30 (12), e4488, 2018
32018
Optimization in computational systems biology via high performance computing techniques
DR Penas
22017
Application of decomposition techniques in a wildfire suppression optimization model
J Rodríguez-Veiga, DR Penas, ÁM González-Rueda, ...
Optimization and Engineering 24 (4), 2513-2548, 2023
12023
Multimethod optimization for reverse engineering of complex biological networks
P González, DR Penas, XC Pardo, JR Banga, R Doallo
Proceedings of the 6th International Workshop on Parallelism in …, 2018
12018
Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells
PF Lang, DR Penas, JR Banga, D Weindl, B Novak
PLOS Computational Biology 20 (1), e1011151, 2024
2024
Optimal evaluation of energy yield and driving force in microbial metabolic pathway variants
A Taha, M Patón, DR Penas, JR Banga, J Rodríguez
PLOS Computational Biology 19 (7), e1011264, 2023
2023
Parameter estimation in a whole-brain network model of epilepsy: comparison of parallel global optimization solvers
DR Penas, M Hashemi, VK Jirsa, JR Banga
bioRxiv, 2023.11. 01.565083, 2023
2023
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Articles 1–20