Justin Crocker

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David L SternJanelia Research Campus, HHMIVerified email at janelia.hhmi.org
Albert TsaiEMBL HeidelbergVerified email at embl.de
Richard S. MannProfessor of Biochemistry, Neuroscience and Systems Biology, Zuckerman Mind Brain Behavior InstituteVerified email at columbia.edu
Nicolas FrankelUniversity of Buenos Aires and CONICETVerified email at ege.fcen.uba.ar
Albert ErivesUniversity of IowaVerified email at uiowa.edu
Timothy FuquaPostdoc at the University of Zurich (UZH) in Andreas Wagner's groupVerified email at uzh.ch
Mariana RP AlvesCo-founder & co-director of Cartas com Ciência; Postdoctoral Researcher in Science Education (CIDTFFVerified email at cartascomciencia.org
Rafael GalupaCentre de Biologie Intégrative, Toulouse (France)Verified email at univ-tlse3.fr
Ella Preger-Ben NoonTechnion - Israel Institute of TechnologyVerified email at technion.ac.il
Robert H. SingerAlbert Einstein College of MedicineVerified email at einsteinmed.edu
François PayreCNRSVerified email at univ-tlse3.fr
Harmen J. BussemakerColumbia UniversityVerified email at columbia.edu
Garth IlsleyEMBL-EBIVerified email at ebi.ac.uk
Joshua D. MastPerlara PBCVerified email at perlara.com
Andrew LemireStern Lab, Janelia Research Campus - HHMIVerified email at janelia.hhmi.org
Anand Kumar MuthusamyCaltechVerified email at caltech.edu
Chaitanya RastogiAssociate Research Scientist, Columbia UniversityVerified email at columbia.edu
Yoichiro TamoriGraduate School of Medicine, Kyoto University, JapanVerified email at kyoto-u.ac.jp
Yun DingDepartment of Biology, University of PennsylvaniaVerified email at sas.upenn.edu
Shaojin WangNorthwest A&F UniversityVerified email at nwsuaf.edu.cn

Justin Crocker

Group Leader, EMBL Heidelberg

Verified email at embl.de - Homepage

Evolution Development gene regulation


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Low affinity binding site clusters confer hox specificity and regulatory robustness J Crocker, N Abe, L Rinaldi, AP McGregor, N Frankel, S Wang, ... Cell 160 (1), 191-203, 2015	406	2015
The Soft Touch: Low-Affinity Transcription Factor Binding Sites in Development and Evolution J Crocker, EPB Noon, DL Stern Current topics in developmental biology 117, 455-469, 2016	151	2016
Nuclear microenvironments modulate transcription from low-affinity enhancers A Tsai, AK Muthusamy, MRP Alves, LD Lavis, RH Singer, DL Stern, ... elife 6, e28975, 2017	138	2017
Accurate and sensitive quantification of protein-DNA binding affinity C Rastogi, HT Rube, JF Kribelbauer, J Crocker, RE Loker, GD Martini, ... Proceedings of the National Academy of Sciences 115 (16), E3692-E3701, 2018	118	2018
Evolution acts on enhancer organization to fine-tune gradient threshold readouts J Crocker, Y Tamori, A Erives PLoS biology 6 (11), e263, 2008	109	2008
TALE-mediated modulation of transcriptional enhancers in vivo J Crocker, DL Stern Nature methods, 2013	92	2013
Multi-enhancer transcriptional hubs confer phenotypic robustness A Tsai, MRP Alves, J Crocker eLife, 8:e45325, 2019	90	2019
Dense and pleiotropic regulatory information in a developmental enhancer T Fuqua, J Jordan, ME van Breugel, A Halavatyi, C Tischer, P Polidoro, ... Nature 587 (7833), 235-239, 2020	74	2020
Genetic and Transgenic Reagents for Drosophila simulans, D. mauritiana, D. yakuba, D. santomea, and D. virilis DL Stern, J Crocker, Y Ding, N Frankel, G Kappes, E Kim, R Kuzmickas, ... G3: Genes, Genomes, Genetics 7 (4), 1339-1347, 2017	70	2017
A fully synthetic transcriptional platform for a multicellular eukaryote J Crocker, A Tsai, DL Stern Cell Reports 18 (1), 287-296, 2017	41	2017
Quantitatively predictable control of Drosophila transcriptional enhancers in vivo with engineered transcription factors J Crocker, GR Ilsley, DL Stern Nature genetics 48 (3), 292-298, 2016	40	2016
Dynamic evolution of precise regulatory encodings creates the clustered site signature of enhancers J Crocker, N Potter, A Erives Nature communications 1 (1), 99, 2010	40	2010
Enhancer architecture and chromatin accessibility constrain phenotypic space during Drosophila development R Galupa, G Alvarez-Canales, NO Borst, T Fuqua, L Gandara, N Misunou, ... Developmental Cell 58 (1), 51-62. e4, 2023	37	2023
Using synthetic biology to study gene regulatory evolution J Crocker, GR Ilsley Current opinion in genetics & development 47, 91-101, 2017	36	2017
A Closer Look at the eve Stripe 2 Enhancers of Drosophila and Themira J Crocker, A Erives PLoS genetics 4 (11), e1000276, 2008	31	2008
A Schnurri/Mad/Medea complex attenuates the Dorsal-Twist gradient readout at vnd J Crocker, A Erives Developmental biology, 2013	28	2013
Functional regulatory evolution outside of the minimal even-skipped stripe 2 enhancer J Crocker, DL Stern Development 144 (17), 3095-3101, 2017	20	2017
Robust and efficient gene regulation through localized nuclear microenvironments A Tsai, R Galupa, J Crocker Development 147 (19), dev161430, 2020	17	2020
An open-source semi-automated robotics pipeline for embryo immunohistochemistry T Fuqua, J Jordan, A Halavatyi, C Tischer, K Richter, J Crocker Scientific Reports 11 (1), 10314, 2021	15	2021
Developmental phenomics suggests that H3K4 monomethylation confers multi-level phenotypic robustness L Gandara, A Tsai, M Ekelöf, R Galupa, EPB Noon, T Alexandrov, ... Cell Reports 41 (11), 2022	13*	2022

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