Anika Oellrich

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Dietrich Rebholz-SchuhmannZB MED -- Information Center for Life SciencesVerified email at zbmed.de
Robert HoehndorfKing Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Damian SmedleyQueen Mary University of LondonVerified email at qmul.ac.uk
Nigel CollierProfessor of Natural Language Processing, University of CambridgeVerified email at cam.ac.uk
Peter RobinsonProfessor of Computational Biology, The Jackson Laboratory for Genomic MedicineVerified email at jax.org
Sebastian KöhlerSenior Information Architect, Ada Health; Member of Monarch InitiativeVerified email at ada.com
Tudor GrozaPryzm HealthVerified email at pryzm.health
Michel DumontierDistinguished Professor of Data Science, Maastricht UniversityVerified email at maastrichtuniversity.nl
Christopher J MungallLawrence Berkeley National LaboratoryVerified email at lbl.gov
Maria LiakataProfessor Queen Mary University of London/University of Warwick, Alan Turing Institute AI FellowVerified email at qmul.ac.uk
Nicole L WashingtonHelixVerified email at helix.com
George GkotsisSenior Research ScientistVerified email at kcl.ac.uk
Kai WangChildren's Hospital of PhiladelphiaVerified email at email.chop.edu
Prof. Dr. med., Dipl. Phys. Peter KrawitzInstitute for Genomic Statistics and BioinformaticsVerified email at uni-bonn.de
Sebastian BauerVerified email at sebastianbauer.info
Nigam ShahAssociate Professor of Medicine, Stanford UniversityVerified email at stanford.edu
Janet KelsoMPI EVAVerified email at eva.mpg.de
Irene PapatheodorouEMBL-EBIVerified email at ebi.ac.uk
Mai-Vu Tran (Trần Mai Vũ)Phòng thí nghiệm Công nghệ tri thức, Đại học Công nghệ, Đại học Quốc Gia Hà NộiVerified email at vnu.edu.vn
Sarala M WimalaratneDataCiteVerified email at datacite.org

Anika Oellrich

King's College London

Verified email at kcl.ac.uk

Computational biology Knowledge representation Semantic similarity Electronic Health Records Virtual patient


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Improved exome prioritization of disease genes through cross-species phenotype comparison PN Robinson, S Köhler, A Oellrich, K Wang, CJ Mungall, SE Lewis, ... Genome research 24 (2), 340-348, 2014	253	2014
Text-mining solutions for biomedical research: enabling integrative biology D Rebholz-Schuhmann, A Oellrich, R Hoehndorf Nature Reviews Genetics 13 (12), 829-839, 2012	222	2012
Finding our way through phenotypes AR Deans, SE Lewis, E Huala, SS Anzaldo, M Ashburner, JP Balhoff, ... PLoS Biol 13 (1), e1002033, 2015	178	2015
PhenoDigm: analyzing curated annotations to associate animal models with human diseases D Smedley, A Oellrich, S Köhler, B Ruef, M Westerfield, P Robinson, ... Database 2013, 2013	107	2013
Characterisation of mental health conditions in social media using Informed Deep Learning G Gkotsis, A Oellrich, S Velupillai, M Liakata, TJP Hubbard, RJB Dobson, ... Scientific reports 7 (1), 1-11, 2017	99	2017
Relations as patterns: bridging the gap between OBO and OWL R Hoehndorf, A Oellrich, M Dumontier, J Kelso, D Rebholz-Schuhmann, ... BMC bioinformatics 11 (1), 1-8, 2010	70	2010
Automatic concept recognition using the human phenotype ontology reference and test suite corpora T Groza, S Köhler, S Doelken, N Collier, A Oellrich, D Smedley, FM Couto, ... Database 2015, 2015	58	2015
The digital revolution in phenotyping A Oellrich, N Collier, T Groza, D Rebholz-Schuhmann, N Shah, ... Briefings in bioinformatics 17 (5), 819-830, 2016	55	2016
The language of mental health problems in social media G Gkotsis, A Oellrich, TJP Hubbard, RJB Dobson, M Liakata, ... Third Computational Linguistics and Clinical Psychology Workshop (NAACL), 2016	54	2016
Interoperability between phenotype and anatomy ontologies R Hoehndorf, A Oellrich, D Rebholz-Schuhmann Bioinformatics 26 (24), 3112-3118, 2010	53	2010
Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning R Hoehndorf, M Dumontier, A Oellrich, D Rebholz-Schuhmann, ... PloS one 6 (7), e22006, 2011	50	2011
A common layer of interoperability for biomedical ontologies based on OWL EL R Hoehndorf, M Dumontier, A Oellrich, S Wimalaratne, ... Bioinformatics 27 (7), 1001-1008, 2011	50	2011
An ontology approach to comparative phenomics in plants A Oellrich, RL Walls, EKS Cannon, SB Cannon, L Cooper, J Gardiner, ... Plant methods 11 (1), 1-15, 2015	48	2015
Don’t Let Notes Be Misunderstood: A Negation Detection Method for Assessing Risk of Suicide in Mental Health Records G Gkotsis, S Velupillai, A Oellrich, H Dean, M Liakata, R Dutta Third Computational Linguistics and Clinical Psychology Workshop (NAACL), 2016	41	2016
PhenoMiner: from text to a database of phenotypes associated with OMIM diseases N Collier, T Groza, D Smedley, PN Robinson, A Oellrich, ... Database 2015, 2015	28	2015
Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases A Oellrich, R Hoehndorf, GV Gkoutos, D Rebholz-Schuhmann PloS one 7 (6), e38937, 2012	24	2012
Linking PharmGKB to phenotype studies and animal models of disease for drug repurposing R Hoehndorf, A Oellrich, D Rebholz-Schuhmann, PN Schofield, ... Biocomputing 2012, 388-399, 2012	24	2012
Linking gene expression to phenotypes via pathway information I Papatheodorou, A Oellrich, D Smedley Journal of biomedical semantics 6 (1), 1-7, 2015	23	2015
Disease insights through cross-species phenotype comparisons MA Haendel, N Vasilevsky, M Brush, HS Hochheiser, J Jacobsen, ... Mammalian Genome 26 (9), 548-555, 2015	21	2015
Generation of silver standard concept annotations from biomedical texts with special relevance to phenotypes A Oellrich, N Collier, D Smedley, T Groza PloS one 10 (1), e0116040, 2015	20	2015

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