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Oliver Kohlbacher
Oliver Kohlbacher
Professor for Applied Bioinformatics, University of Tübingen
Verified email at uni-tuebingen.de - Homepage
Title
Cited by
Cited by
Year
Charting a dynamic DNA methylation landscape of the human genome
MJ Ziller, H Gu, F Müller, J Donaghey, LTY Tsai, O Kohlbacher, ...
Nature 500 (7463), 477-481, 2013
12222013
OpenMS–an open-source software framework for mass spectrometry
M Sturm, A Bertsch, C Gröpl, A Hildebrandt, R Hussong, E Lange, ...
BMC bioinformatics 9 (1), 1-11, 2008
11462008
Severe COVID-19 is marked by a dysregulated myeloid cell compartment
J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ...
Cell 182 (6), 1419-1440. e23, 2020
7242020
Visualization of omics data for systems biology
N Gehlenborg, SI O'donoghue, NS Baliga, A Goesmann, MA Hibbs, ...
Nature methods 7 (3), S56-S68, 2010
6792010
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity
M Röttig, MH Medema, K Blin, T Weber, C Rausch, O Kohlbacher
Nucleic acids research 39 (suppl_2), W362-W367, 2011
6132011
Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs)
C Rausch, T Weber, O Kohlbacher, W Wohlleben, DH Huson
Nucleic acids research 33 (18), 5799-5808, 2005
4852005
OptiType: precision HLA typing from next-generation sequencing data
A Szolek, B Schubert, C Mohr, M Sturm, M Feldhahn, O Kohlbacher
Bioinformatics 30 (23), 3310-3316, 2014
4502014
Sequence co-evolution gives 3D contacts and structures of protein complexes
TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ...
elife 3, e03430, 2014
4432014
Comprehensive analysis of alternative splicing across tumors from 8,705 patients
A Kahles, KV Lehmann, NC Toussaint, M Hüser, SG Stark, ...
Cancer cell 34 (2), 211-224. e6, 2018
4382018
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells
CA Gifford, MJ Ziller, H Gu, C Trapnell, J Donaghey, A Tsankov, ...
Cell 153 (5), 1149-1163, 2013
4212013
OpenMS: a flexible open-source software platform for mass spectrometry data analysis
HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ...
Nature methods 13 (9), 741-748, 2016
4192016
MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition
A Höglund, P Dönnes, T Blum, HW Adolph, O Kohlbacher
Bioinformatics 22 (10), 1158-1165, 2006
4072006
SARS-CoV-2-derived peptides define heterologous and COVID-19-induced T cell recognition
A Nelde, T Bilich, JS Heitmann, Y Maringer, HR Salih, M Roerden, ...
Nature immunology 22 (1), 74-85, 2021
3502021
TOPP—the OpenMS proteomics pipeline
O Kohlbacher, K Reinert, C Gröpl, E Lange, N Pfeifer, O Schulz-Trieglaff, ...
Bioinformatics 23 (2), e191-e197, 2007
3292007
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature methods 17 (9), 905-908, 2020
3152020
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction
T Blum, S Briesemeister, O Kohlbacher
BMC bioinformatics 10 (1), 1-11, 2009
2942009
YLoc—an interpretable web server for predicting subcellular localization
S Briesemeister, J Rahnenfï¿ ½hrer, O Kohlbacher
Nucleic acids research 38 (suppl_2), W497-W502, 2010
2892010
Tools for label-free peptide quantification
S Nahnsen, C Bielow, K Reinert, O Kohlbacher
Molecular & Cellular Proteomics 12 (3), 549-556, 2013
2672013
Simultaneous alignment of short reads against multiple genomes
K Schneeberger, J Hagmann, S Ossowski, N Warthmann, S Gesing, ...
Genome biology 10 (9), 1-12, 2009
2552009
WIPI proteins: essential PtdIns3P effectors at the nascent autophagosome
T Proikas-Cezanne, Z Takacs, P Dönnes, O Kohlbacher
Journal of cell science 128 (2), 207-217, 2015
2472015
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Articles 1–20