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Rebecca F Alford
Rebecca F Alford
Johnson and Johnson Innovative Medicine
Verified email at its.jnj.com
Title
Cited by
Cited by
Year
The Rosetta all-atom energy function for macromolecular modeling and design
RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ...
Journal of chemical theory and computation 13 (6), 3031-3048, 2017
14062017
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
6722020
An integrated framework advancing membrane protein modeling and design
RF Alford, J Koehler Leman, BD Weitzner, AM Duran, DC Tilley, A Elazar, ...
PLoS computational biology 11 (9), e1004398, 2015
1772015
Robust classification of protein variation using structural modelling and large-scale data integration
EH Baugh, R Simmons-Edler, CL Müller, RF Alford, N Volfovsky, AE Lash, ...
Nucleic acids research 44 (6), 2501-2513, 2016
742016
Protein structure prediction and design in a biologically realistic implicit membrane
RF Alford, PJ Fleming, KG Fleming, JJ Gray
Biophysical Journal 118 (8), 2042-2055, 2020
642020
A humanized yeast system to analyze cleavage of prelamin A by ZMPSTE24
ED Spear, RF Alford, TD Babatz, KM Wood, OW Mossberg, ...
Methods 157, 47-55, 2019
212019
Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks
J Koehler Leman, S Lyskov, SM Lewis, J Adolf-Bryfogle, RF Alford, ...
Nature communications 12 (1), 6947, 2021
172021
Protein docking and steered molecular dynamics suggest alternative phospholamban-binding sites on the SERCA calcium transporter
RF Alford, N Smolin, HS Young, JJ Gray, SL Robia
Journal of Biological Chemistry 295 (32), 11262-11274, 2020
172020
A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design
RF Alford, A Leaver-Fay, L Gonzales, EL Dolan, JJ Gray
PLoS computational biology 13 (12), e1005837, 2017
162017
PyRosetta Jupyter notebooks teach biomolecular structure prediction and design
KH Le, J Adolf-Bryfogle, JC Klima, S Lyskov, JW Labonte, S Bertolani, ...
The Biophysicist 2 (1), 108-122, 2021
152021
Diverse scientific benchmarks for implicit membrane energy functions
RF Alford, R Samanta, JJ Gray
Journal of chemical theory and computation 17 (8), 5248-5261, 2021
52021
Membrane protein engineering with rosetta
RF Alford, JJ Gray
Computational Design of Membrane Proteins, 43-57, 2021
52021
Correction to “the rosetta all-atom energy function for macromolecular modeling and design”
RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ...
Journal of chemical theory and computation 18 (7), 4594-4594, 2022
32022
EGGNet, a generalizable geometric deep learning framework for protein complex pose scoring
Z Wang, R Brand, J Adolf-Bryfogle, J Grewal, Y Qi, SA Combs, ...
ACS omega 9 (7), 7471-7479, 2024
22024
Rosetta-MPDock: a novel computational tool for protein-protein docking within the membrane bilayer
JK Leman, RF Alford, JJ Gray
Biophysical Journal 108 (2), 250a, 2015
22015
Toward biologically realistic computational membrane protein structure prediction and design
RF Alford
The Johns Hopkins University, 2020
2020
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