| BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs FA Simão, RM Waterhouse, P Ioannidis, EV Kriventseva, EM Zdobnov Bioinformatics 31 (19), 3210-3212, 2015 | 7710 | 2015 |
| BUSCO applications from quality assessments to gene prediction and phylogenomics RM Waterhouse, M Seppey, FA Simão, M Manni, P Ioannidis, ... Molecular biology and evolution 35 (3), 543-548, 2018 | 1602 | 2018 |
| OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs EM Zdobnov, F Tegenfeldt, D Kuznetsov, RM Waterhouse, FA Simão, ... Nucleic acids research 45 (D1), D744-D749, 2017 | 407 | 2017 |
| OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software EV Kriventseva, F Tegenfeldt, TJ Petty, RM Waterhouse, FA Simao, ... Nucleic acids research 43 (D1), D250-D256, 2015 | 281 | 2015 |
| Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle … DD McKenna, ED Scully, Y Pauchet, K Hoover, R Kirsch, SM Geib, ... Genome biology 17 (1), 1-18, 2016 | 231 | 2016 |
| Unique features of a global human ectoparasite identified through sequencing of the bed bug genome JB Benoit, ZN Adelman, K Reinhardt, A Dolan, M Poelchau, EC Jennings, ... Nature communications 7 (1), 10165, 2016 | 169 | 2016 |
| Functional assays and metagenomic analyses reveals differences between the microbial communities inhabiting the soil horizons of a Norway spruce plantation S Uroz, P Ioannidis, J Lengelle, A Cébron, E Morin, M Buee, F Martin PLoS One 8 (2), e55929, 2013 | 167 | 2013 |
| A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor C Zhao, LN Escalante, H Chen, TR Benatti, J Qu, S Chellapilla, ... Current Biology 25 (5), 613-620, 2015 | 157 | 2015 |
| Gene content evolution in the arthropods GWC Thomas, E Dohmen, DST Hughes, SC Murali, M Poelchau, ... Genome biology 21 (1), 1-14, 2020 | 137* | 2020 |
| Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and … MA Hoy, RM Waterhouse, K Wu, AS Estep, P Ioannidis, WJ Palmer, ... Genome biology and evolution 8 (6), 1762-1775, 2016 | 108 | 2016 |
| Extensive genomic diversity of closely related Wolbachia strains N Ishmael, JCD Hotopp, P Ioannidis, S Biber, J Sakamoto, S Siozios, ... Microbiology 155 (Pt 7), 2211, 2009 | 94 | 2009 |
| The Diversity and Evolution of Wolbachia Ankyrin Repeat Domain Genes S Siozios, P Ioannidis, L Klasson, SGE Andersson, HR Braig, K Bourtzis PLoS One 8 (2), e55390, 2013 | 88 | 2013 |
| Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome KA Panfilio, IM Vargas Jentzsch, JB Benoit, D Erezyilmaz, Y Suzuki, ... Genome biology 20, 1-26, 2019 | 84 | 2019 |
| Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions CA Anstead, PK Korhonen, ND Young, RS Hall, AR Jex, SC Murali, ... Nature communications 6 (1), 7344, 2015 | 81 | 2015 |
| BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs F Simao Neto, R Waterhouse, P Ioannidis, E Kriventseva, E Zdobnov Bioinformatics 31 (19), 3210-3212, 2015 | 58 | 2015 |
| Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders P Ioannidis, FA Simao, RM Waterhouse, M Manni, M Seppey, ... Genome biology and evolution 9 (2), 415-430, 2017 | 57 | 2017 |
| Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest ME Sparks, R Bansal, JB Benoit, MB Blackburn, H Chao, M Chen, ... BMC genomics 21 (1), 1-26, 2020 | 50 | 2020 |
| Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys P Ioannidis, Y Lu, N Kumar, T Creasy, S Daugherty, MC Chibucos, J Orvis, ... BMC genomics 15, 1-22, 2014 | 48 | 2014 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 46 | 2016 |
| Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayi P Ioannidis, KL Johnston, DR Riley, N Kumar, JR White, KT Olarte, S Ott, ... BMC genomics 14 (1), 1-17, 2013 | 46 | 2013 |
Robert M. WaterhouseDept. Ecology & Evolution & Swiss Institute of Bioinformatics, University of LausanneVerified email at unil.ch
