| Improving reproducibility in computational biology research JA Papin, F Mac Gabhann, HM Sauro, D Nickerson, A Rampadarath PLOS Computational Biology 16 (5), e1007881, 2020 | 36 | 2020 |
| Best practices for making reproducible biochemical models VL Porubsky, AP Goldberg, AK Rampadarath, DP Nickerson, JR Karr, ... Cell systems 11 (2), 109-120, 2020 | 28 | 2020 |
| BioSimulators: a central registry of simulation engines and services for recommending specific tools B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ... Nucleic acids research 50 (W1), W108-W114, 2022 | 16 | 2022 |
| A distribution-moment approximation for coupled dynamics of the airway wall and airway smooth muscle AK Rampadarath, GM Donovan Biophysical journal 114 (2), 493-501, 2018 | 9 | 2018 |
| libOmexMeta: enabling semantic annotation of models to support FAIR principles C Welsh, DP Nickerson, A Rampadarath, ML Neal, HM Sauro, JH Gennari Bioinformatics 37 (24), 4898-4900, 2021 | 7 | 2021 |
| NLIMED: Natural Language Interface for model entity discovery in biosimulation model repositories Y Munarko, DM Sarwar, A Rampadarath, K Atalag, JH Gennari, ML Neal, ... Frontiers in Physiology 13, 820683, 2022 | 4 | 2022 |
| SBMate: A Framework for Evaluating Quality of Annotations in Systems Biology Models W Shin, JL Hellerstein, Y Munarko, ML Neal, DP Nickerson, ... bioRxiv, 2021.10. 09.463757, 2021 | 2 | 2021 |
| Mathematical modelling of lung function—what have we learnt and where to next? AK Rampadarath, GM Donovan Current Opinion in Physiology 21, 17-22, 2021 | 2 | 2021 |
| Airway smooth muscle and airway wall coupled dynamics: A numerical study using the distribution moment approach A Rampadarath PhD Thesis-University of Auckland, 2018 | 2 | 2018 |
| CASBERT: BERT-based retrieval for compositely annotated biosimulation model entities Y Munarko, A Rampadarath, DP Nickerson Frontiers in Bioinformatics 3, 1107467, 2023 | 1 | 2023 |
| An in silico study examining the role of airway smooth muscle dynamics and airway compliance on the rate of airway re-narrowing after deep inspiration AK Rampadarath, GM Donovan Respiratory Physiology & Neurobiology 271, 103257, 2020 | 1 | 2020 |
| Building a search tool for compositely annotated entities using Transformer-based approach: Case study in Biosimulation Model Search Engine (BMSE) Y Munarko, A Rampadarath, D Nickerson F1000Research 12, 2023 | | 2023 |
| Automated Execution of Simulation Studies in Systems Medicine Using SED-ML and COMBINE Archive AK Rampadarath, DP Nickerson Academic Press, 2021 | | 2021 |
| Physiome curation system for reproducible models: Reproducibility, Reusability, Discoverability K Lundengard, D Nickerson, T Yu, A Rampadarath The University of Auckland, 2020 | | 2020 |
| Curation of computational biology models D Nickerson, A Rampadarath The University of Auckland, 2020 | | 2020 |
| NLIMED: Natural Language Interface for Model Entity Discovery Y Munarko, DM Sarwar, A Rampadarath, K Atalag, D Nickerson The University of Auckland, 2020 | | 2020 |
| Numerical Study of Deep Inspiration on Coupled Airway Wall and Airway Smooth Muscle A Rampadarath, GM Donovan C29. LUNG STRUCTURE AND FUNCTION: NEW INSIGHTS FROM MEASUREMENT AND MODELING …, 2018 | | 2018 |
David Phillip NickersonAuckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
