Matthew  D Young
Matthew D Young
Wellcome Sanger Institute
Verified email at sanger.ac.uk
TitleCited byYear
Method Gene ontology analysis for RNA-seq: accounting for selection bias
MD Young, MJ Wakefield, GK Smyth, A Oshlack
2484*2010
From RNA-seq reads to differential expression results
A Oshlack, MD Robinson, MD Young
Genome biology 11 (12), 220, 2010
6982010
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity
MD Young, TA Willson, MJ Wakefield, E Trounson, DJ Hilton, ME Blewitt, ...
Nucleic Acids Research 39 (17), 7415-7427, 2011
2352011
Intra-tumour diversification in colorectal cancer at the single-cell level
SF Roerink, N Sasaki, H Lee-Six, MD Young, LB Alexandrov, S Behjati, ...
Nature 556 (7702), 457, 2018
1202018
Global changes in the mammary epigenome are induced by hormonal cues and coordinated by Ezh2
B Pal, T Bouras, W Shi, F Vaillant, JM Sheridan, N Fu, K Breslin, K Jiang, ...
Cell reports 3 (2), 411-426, 2013
1062013
Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors
MD Young, TJ Mitchell, FAV Braga, MGB Tran, BJ Stewart, JR Ferdinand, ...
Science 361 (6402), 594-599, 2018
722018
Recurrent mutation of IGF signalling genes and distinct patterns of genomic rearrangement in osteosarcoma
S Behjati, PS Tarpey, K Haase, H Ye, MD Young, LB Alexandrov, ...
Nature communications 8, 15936, 2017
702017
goseq: Gene Ontology testing for RNA-seq datasets
MD Young, MJ Wakefield, GK Smyth, A Oshlack
482011
The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis
JW Li, K Robison, M Martin, A Sjödin, B Usadel, M Young, EC Olivares, ...
Nucleic acids research 40 (D1), D1313-D1317, 2011
412011
Rearrangement bursts generate canonical gene fusions in bone and soft tissue tumors
ND Anderson, R de Borja, MD Young, F Fuligni, A Rosic, ND Roberts, ...
Science 361 (6405), eaam8419, 2018
292018
Dependence of fragmentation in self-gravitating accretion discs on small-scale structure
MD Young, CJ Clarke
Monthly Notices of the Royal Astronomical Society 451 (4), 3987-3994, 2015
292015
Recurrent rearrangements of FOS and FOSB define osteoblastoma
MW Fittall, W Mifsud, N Pillay, H Ye, AC Strobl, A Verfaillie, ...
Nature communications 9 (1), 2150, 2018
252018
Binary accretion rates: dependence on temperature and mass ratio
MD Young, CJ Clarke
Monthly Notices of the Royal Astronomical Society 452 (3), 3085-3091, 2015
232015
Quantification of stochastic fragmentation of self-gravitating discs
MD Young, CJ Clarke
Monthly Notices of the Royal Astronomical Society 455 (2), 1438-1442, 2015
222015
BBKNN: fast batch alignment of single cell transcriptomes
K Polański, MD Young, Z Miao, KB Meyer, SA Teichmann, JE Park
Bioinformatics, 2019
192019
The evolution of the mass ratio of accreting binaries: the role of gas temperature
MD Young, JT Baird, CJ Clarke
Monthly Notices of the Royal Astronomical Society 447 (3), 2907-2914, 2015
172015
The driver landscape of sporadic chordoma
PS Tarpey, S Behjati, MD Young, I Martincorena, LB Alexandrov, ...
Nature communications 8 (1), 890, 2017
162017
Differential expression for RNA sequencing (RNA-Seq) data: mapping, summarization, statistical analysis, and experimental design
MD Young, DJ McCarthy, MJ Wakefield, GK Smyth, A Oshlack, ...
Bioinformatics for high throughput sequencing, 169-190, 2012
162012
Differential Expression for RNA Sequencing (RNA-Seq) Data: Mapping, Summarization, Statistical Analysis, and Experimental Design
MD Young, DJ McCarthy, MJ Wakefield, GK Smyth, A Oshlack, ...
Bioinformatics for High Throughput Sequencing, 169-190, 2012
162012
An integrated genomic analysis of anaplastic meningioma identifies prognostic molecular signatures
G Collord, P Tarpey, N Kurbatova, I Martincorena, S Moran, M Castro, ...
Scientific reports 8 (1), 13537, 2018
92018
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Articles 1–20