David Couvin
David Couvin
Bioinformatician, Institut Pasteur de la Guadeloupe
Verified email at pasteur-guadeloupe.fr
Cited by
Cited by
SITVITWEB–a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology
C Demay, B Liens, T Burguière, V Hill, D Couvin, J Millet, I Mokrousov, ...
Infection, genetics and evolution 12 (4), 755-766, 2012
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
D Couvin, A Bernheim, C Toffano-Nioche, M Touchon, J Michalik, ...
Nucleic acids research 46 (W1), W246-W251, 2018
Tuberculosis–a global emergency: tools and methods to monitor, understand, and control the epidemic with specific example of the Beijing lineage
D Couvin, N Rastogi
Tuberculosis 95, S177-S189, 2015
The Guinea-Bissau family of Mycobacterium tuberculosis complex revisited
R Groenheit, S Ghebremichael, J Svensson, P Rabna, R Colombatti, ...
PloS one 6 (4), e18601, 2011
Macro-geographical specificities of the prevailing tuberculosis epidemic as seen through SITVIT2, an updated version of the Mycobacterium tuberculosis genotyping database
D Couvin, A David, T Zozio, N Rastogi
Infection, Genetics and Evolution 72, 31-43, 2019
Genetic diversity of Mycobacterium tuberculosis in Peru and exploration of phylogenetic associations with drug resistance
P Sheen, D Couvin, L Grandjean, M Zimic, M Dominguez, G Luna, ...
PloS one 8 (6), e65873, 2013
Strain diversity of Mycobacterium tuberculosis isolates from pulmonary tuberculosis patients in Afar pastoral region of Ethiopia
M Belay, G Ameni, G Bjune, D Couvin, N Rastogi, F Abebe
BioMed research international 2014, 2014
Genetic diversity and drug susceptibility profile of Mycobacterium tuberculosis isolated from different regions of India
J Singh, MM Sankar, P Kumar, D Couvin, N Rastogi, S Singh, VM Katoch, ...
Journal of Infection 71 (2), 207-219, 2015
Strain classification of Mycobacterium tuberculosis isolates in Brazil based on genotypes obtained by spoligotyping, mycobacterial interspersed repetitive unit typing and the …
SEG Vasconcellos, CC Acosta, LL Gomes, EC Conceição, KV Lima, ...
PloS one 9 (10), e107747, 2014
Population structure among Mycobacterium tuberculosis isolates from pulmonary tuberculosis patients in Colombia
T Realpe, N Correa, JC Rozo, BE Ferro, V Gomez, E Zapata, W Ribon, ...
PloS one 9 (4), e93848, 2014
Mapping of Mycobacterium tuberculosis Complex Genetic Diversity Profiles in Tanzania and Other African Countries
EV Mbugi, BZ Katale, EM Streicher, JD Keyyu, SL Kendall, HM Dockrell, ...
PloS one 11 (5), e0154571, 2016
Genetic diversity among multidrug-resistant Mycobacterium tuberculosis strains in Mexico
A Martinez-Guarneros, N Rastogi, D Couvin, A Escobar-Gutierrez, ...
Infection, Genetics and Evolution 14, 434-443, 2013
Mixed infections and rifampin heteroresistance among Mycobacterium tuberculosis clinical isolates
C Zheng, S Li, Z Luo, R Pi, H Sun, Q He, K Tang, M Luo, Y Li, D Couvin, ...
Journal of clinical microbiology 53 (7), 2138-2147, 2015
A first insight on the population structure of Mycobacterium tuberculosis complex as studied by spoligotyping and MIRU-VNTRs in Santiago, Chile
ME Balcells, P García, P Meza, C Peña, M Cifuentes, D Couvin, N Rastogi
PloS one 10 (2), e0118007, 2015
Molecular epidemiology of tuberculosis in Finland, 2008-2011
PW Smit, M Haanperä, P Rantala, D Couvin, O Lyytikäinen, N Rastogi, ...
PloS one 8 (12), e85027, 2013
CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of …
C Pourcel, M Touchon, N Villeriot, JP Vernadet, D Couvin, ...
Nucleic acids research 48 (D1), D535-D544, 2020
The Association between Mycobacterium tuberculosis genotype and drug resistance in Peru
L Grandjean, T Iwamoto, A Lithgow, RH Gilman, K Arikawa, N Nakanishi, ...
PLoS One 10 (5), e0126271, 2015
Characterization of the genetic diversity of extensively-drug resistant Mycobacterium tuberculosis clinical isolates from pulmonary tuberculosis patients in Peru
O Cáceres, N Rastogi, C Bartra, D Couvin, M Galarza, L Asencios, ...
PLoS One 9 (12), e112789, 2014
The population structure of drug-resistant Mycobacterium tuberculosis clinical isolates from Sichuan in China
Y Zhao, Q Feng, K Tang, C Zhang, H Sun, T Luo, Z Yang, D Couvin, ...
Infection, Genetics and Evolution 12 (4), 718-724, 2012
Geospatial distribution of Mycobacterium tuberculosis genotypes in Africa
VN Chihota, A Niehaus, EM Streicher, X Wang, SL Sampson, P Mason, ...
PLoS One 13 (8), e0200632, 2018
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