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Alex Buchanan
Alex Buchanan
Verified email at lifetime.oregonstate.edu - Homepage
Title
Cited by
Cited by
Year
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1666*2020
Effects of sulforaphane and 3, 3′-diindolylmethane on genome-wide promoter methylation in normal prostate epithelial cells and prostate cancer cells
CP Wong, A Hsu, A Buchanan, Z Palomera-Sanchez, LM Beaver, ...
PloS one 9 (1), e86787, 2014
1412014
Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer
LM Beaver, R Kuintzle, A Buchanan, MW Wiley, ST Glasser, CP Wong, ...
The Journal of nutritional biochemistry 42, 72-83, 2017
912017
RNA-Seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection
A Goyer, L Hamlin, JM Crosslin, A Buchanan, JH Chang
BMC genomics 16, 1-13, 2015
872015
A community effort to create standards for evaluating tumor subclonal reconstruction
A Salcedo, M Tarabichi, SMG Espiritu, AG Deshwar, M David, NM Wilson, ...
Nature biotechnology 38 (1), 97-107, 2020
652020
Interactions of Nitrosomonas europaea and Nitrobacter winogradskyi grown in co-culture
J Pérez, A Buchanan, B Mellbye, R Ferrell, JH Chang, F Chaplen, ...
Archives of microbiology 197, 79-89, 2015
572015
Transcriptome analysis reveals a dynamic and differential transcriptional response to sulforaphane in normal and prostate cancer cells and suggests a role for Sp1 in …
LM Beaver, A Buchanan, EI Sokolowski, AN Riscoe, CP Wong, JH Chang, ...
Molecular nutrition & food research 58 (10), 2001-2013, 2014
372014
Nitrobacter winogradskyi transcriptomic response to low and high ammonium concentrations
L Sayavedra-Soto, R Ferrell, M Dobie, B Mellbye, F Chaplen, A Buchanan, ...
FEMS Microbiology Letters 362 (3), 1-7, 2015
342015
David S. Terry of California: Dueling Judge
AR Buchanan
(No Title), 1956
311956
Phloroglucinol functions as an intracellular and intercellular chemical messenger influencing gene expression in Pseudomonas protegens
JC Clifford, A Buchanan, O Vining, TA Kidarsa, JH Chang, KL McPhail, ...
Environmental Microbiology 18 (10), 3296-3308, 2016
262016
Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges
K Ellrott, A Buchanan, A Creason, M Mason, T Schaffter, B Hoff, J Eddy, ...
Genome biology 20, 1-9, 2019
242019
Large-scale uniform analysis of cancer whole genomes in multiple computing environments
CK Yung, BD O’Connor, S Yakneen, J Zhang, K Ellrott, K Kleinheinz, ...
BioRxiv, 161638, 2017
222017
Alternative splicing in the obligate biotrophic oomycete pathogen Pseudoperonospora cubensis
A Burkhardt, A Buchanan, JS Cumbie, EA Savory, JH Chang, B Day
Molecular Plant-Microbe Interactions 28 (3), 298-309, 2015
222015
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery
A Creason, D Haan, K Dang, KE Chiotti, M Inkman, A Lamb, T Yu, Y Hu, ...
Cell systems 12 (8), 827-838. e5, 2021
202021
Butler enables rapid cloud-based analysis of thousands of human genomes
S Yakneen, SM Waszak, M Gertz, JO Korbel
Nature biotechnology 38 (3), 288-292, 2020
162020
Creating standards for evaluating tumour subclonal reconstruction
A Salcedo, M Tarabichi, SMG Espiritu, AG Deshwar, M David, NM Wilson, ...
bioRxiv, 310425, 2018
72018
Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
I Cortés-Ciriano, JJK Lee, R Xi, D Jain, YL Jung, L Yang, D Gordenin, ...
Nature genetics 55 (6), 1076-1076, 2023
12023
Author Correction: Pan-cancer analysis of whole genomes
Nature 614 (7948), E39-E39, 2023
12023
Crowd-sourced benchmarking of single-sample tumour subclonal reconstruction
A Salcedo, M Tarabichi, A Buchanan, SMG Espiritu, H Zhang, K Zhu, ...
bioRxiv, 2022.06. 14.495937, 2022
12022
Author Correction: The evolutionary history of 2,658 cancers (Nature,(2020), 578, 7793,(122-128), 10.1038/s41586-019-1907-7)
M Gerstung, C Jolly, I Leshchiner, S Dentro, S Gonzalez, D Rosebrock, ...
Nature Research, 2023
2023
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