Thomas Keane
Thomas Keane
Research and Service Group Leader
Verified email at - Homepage
Cited by
Cited by
A map of human genome variation from population scale sequencing
1000 Genomes Project Consortium
Nature 467 (7319), 1061, 2010
An integrated map of genetic variation from 1,092 human genomes
1000 Genomes Project Consortium
Nature 491 (7422), 56, 2012
Twelve years of SAMtools and BCFtools
P Danecek, JK Bonfield, J Liddle, J Marshall, V Ohan, MO Pollard, ...
Gigascience 10 (2), giab008, 2021
Mouse genomic variation and its effect on phenotypes and gene regulation
TM Keane, L Goodstadt, P Danecek, MA White, K Wong, B Yalcin, ...
Nature 477 (7364), 289-294, 2011
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
TM Keane, CJ Creevey, MM Pentony, TJ Naughton, JO Mclnerney
BMC evolutionary biology 6, 1-17, 2006
Demographic history and rare allele sharing among human populations
S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ...
Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011
Twelve years of SAMtools and BCFtools. Gigascience 10: giab008
P Danecek, JK Bonfield, J Liddle, J Marshall, V Ohan, MO Pollard, ...
A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains
MM Simon, S Greenaway, JK White, H Fuchs, V Gailus-Durner, S Wells, ...
Genome biology 14, 1-22, 2013
ABACAS: algorithm-based automatic contiguation of assembled sequences
S Assefa, TM Keane, TD Otto, C Newbold, M Berriman
Bioinformatics 25 (15), 1968-1969, 2009
The genome of the simian and human malaria parasite Plasmodium knowlesi
A Pain, U Böhme, AE Berry, K Mungall, RD Finn, AP Jackson, T Mourier, ...
Nature 455 (7214), 799-803, 2008
Assessing the gene space in draft genomes
G Parra, K Bradnam, Z Ning, T Keane, I Korf
Nucleic acids research 37 (1), 289-297, 2009
New insights into the blood‐stage transcriptome of Plasmodium falciparum using RNA‐Seq
TD Otto, D Wilinski, S Assefa, TM Keane, LR Sarry, U Böhme, J Lemieux, ...
Molecular microbiology 76 (1), 12-24, 2010
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini
Nature communications 5 (1), 3934, 2014
POT1 loss-of-function variants predispose to familial melanoma
CD Robles-Espinoza, M Harland, AJ Ramsay, LG Aoude, V Quesada, ...
Nature genetics 46 (5), 478-481, 2014
Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel
J Huang, B Howie, S McCarthy, Y Memari, K Walter, JL Min, P Danecek, ...
Nature communications 6 (1), 8111, 2015
The mutational landscapes of genetic and chemical models of Kras-driven lung cancer
PMK Westcott, KD Halliwill, MD To, M Rashid, AG Rust, TM Keane, ...
Nature 517 (7535), 489-492, 2015
The BRAF pseudogene functions as a competitive endogenous RNA and induces lymphoma in vivo
FA Karreth, M Reschke, A Ruocco, C Ng, B Chapuy, V Léopold, ...
Cell 161 (2), 319-332, 2015
Sequence-based characterization of structural variation in the mouse genome
B Yalcin, K Wong, A Agam, M Goodson, TM Keane, X Gan, C Nellåker, ...
Nature 477 (7364), 326-329, 2011
HTSlib: C library for reading/writing high-throughput sequencing data
JK Bonfield, J Marshall, P Danecek, H Li, V Ohan, A Whitwham, T Keane, ...
Gigascience 10 (2), giab007, 2021
Off-target mutations are rare in Cas9-modified mice
V Iyer, B Shen, W Zhang, A Hodgkins, T Keane, X Huang, WC Skarnes
Nature methods 12 (6), 479-479, 2015
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