| A map of human genome variation from population scale sequencing 1000 Genomes Project Consortium Nature 467 (7319), 1061, 2010 | 8736 | 2010 |
| An integrated map of genetic variation from 1,092 human genomes 1000 Genomes Project Consortium Nature 491 (7422), 56, 2012 | 8238 | 2012 |
| Twelve years of SAMtools and BCFtools P Danecek, JK Bonfield, J Liddle, J Marshall, V Ohan, MO Pollard, ... Gigascience 10 (2), giab008, 2021 | 4911 | 2021 |
| Mouse genomic variation and its effect on phenotypes and gene regulation TM Keane, L Goodstadt, P Danecek, MA White, K Wong, B Yalcin, ... Nature 477 (7364), 289-294, 2011 | 1605 | 2011 |
| Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified TM Keane, CJ Creevey, MM Pentony, TJ Naughton, JO Mclnerney BMC evolutionary biology 6, 1-17, 2006 | 1210 | 2006 |
| Demographic history and rare allele sharing among human populations S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ... Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011 | 707 | 2011 |
| ABACAS: algorithm-based automatic contiguation of assembled sequences S Assefa, TM Keane, TD Otto, C Newbold, M Berriman Bioinformatics 25 (15), 1968-1969, 2009 | 522 | 2009 |
| A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains MM Simon, S Greenaway, JK White, H Fuchs, V Gailus-Durner, S Wells, ... Genome biology 14, 1-22, 2013 | 510 | 2013 |
| The genome of the simian and human malaria parasite Plasmodium knowlesi A Pain, U Böhme, AE Berry, K Mungall, RD Finn, AP Jackson, T Mourier, ... Nature 455 (7214), 799-803, 2008 | 482 | 2008 |
| Assessing the gene space in draft genomes G Parra, K Bradnam, Z Ning, T Keane, I Korf Nucleic acids research 37 (1), 289-297, 2009 | 479 | 2009 |
| New insights into the blood‐stage transcriptome of Plasmodium falciparum using RNA‐Seq TD Otto, D Wilinski, S Assefa, TM Keane, LR Sarry, U Böhme, J Lemieux, ... Molecular microbiology 76 (1), 12-24, 2010 | 443 | 2010 |
| Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel O Delaneau, J Marchini Nature communications 5 (1), 3934, 2014 | 434 | 2014 |
| POT1 loss-of-function variants predispose to familial melanoma CD Robles-Espinoza, M Harland, AJ Ramsay, LG Aoude, V Quesada, ... Nature genetics 46 (5), 478-481, 2014 | 420 | 2014 |
| Twelve years of SAMtools and BCFtools. Gigascience 10: giab008 P Danecek, JK Bonfield, J Liddle, J Marshall, V Ohan, MO Pollard, ... | 414 | 2021 |
| Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel J Huang, B Howie, S McCarthy, Y Memari, K Walter, JL Min, P Danecek, ... Nature communications 6 (1), 8111, 2015 | 399 | 2015 |
| The mutational landscapes of genetic and chemical models of Kras-driven lung cancer PMK Westcott, KD Halliwill, MD To, M Rashid, AG Rust, TM Keane, ... Nature 517 (7535), 489-492, 2015 | 349 | 2015 |
| Sequence-based characterization of structural variation in the mouse genome B Yalcin, K Wong, A Agam, M Goodson, TM Keane, X Gan, C Nellåker, ... Nature 477 (7364), 326-329, 2011 | 333 | 2011 |
| The BRAF pseudogene functions as a competitive endogenous RNA and induces lymphoma in vivo FA Karreth, M Reschke, A Ruocco, C Ng, B Chapuy, V Léopold, ... Cell 161 (2), 319-332, 2015 | 330 | 2015 |
| Off-target mutations are rare in Cas9-modified mice V Iyer, B Shen, W Zhang, A Hodgkins, T Keane, X Huang, WC Skarnes Nature methods 12 (6), 479-479, 2015 | 213 | 2015 |
| RetroSeq: transposable element discovery from next-generation sequencing data TM Keane, K Wong, DJ Adams Bioinformatics 29 (3), 389-390, 2013 | 208 | 2013 |
Thomas J. NaughtonNational University of Ireland MaynoothVerified email at cs.nuim.ie
