|Large-scale metagenomic-based study of antibiotic resistance in the environment|
J Nesme, S Cécillon, TO Delmont, JM Monier, TM Vogel, P Simonet
Current biology 24 (10), 1096-1100, 2014
|The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria|
J Nesme, P Simonet
Environmental microbiology 17 (4), 913-930, 2015
|Back to the future of soil metagenomics|
J Nesme, W Achouak, SN Agathos, M Bailey, P Baldrian, D Brunel, ...
Frontiers in microbiology 7, 73, 2016
|Estimating the transfer range of plasmids encoding antimicrobial resistance in a wastewater treatment plant microbial community|
L Li, A Dechesne, Z He, JS Madsen, J Nesme, SJ Sřrensen, BF Smets
Environmental Science & Technology Letters 5 (5), 260-265, 2018
|Comparison of antibiotic-resistant bacteria and antibiotic resistance genes abundance in hospital and community wastewater: A systematic review|
N Hassoun-Kheir, Y Stabholz, JU Kreft, R De La Cruz, JL Romalde, ...
Science of the Total Environment 743, 140804, 2020
|Microbial community development and unseen diversity recovery in inoculated sterile soil|
TO Delmont, D Francioli, S Jacquesson, S Laoudi, A Mathieu, J Nesme, ...
Biology and fertility of soils 50 (7), 1069-1076, 2014
|Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus|
JS Sáenz, TV Marques, RSC Barone, JEP Cyrino, S Kublik, J Nesme, ...
Microbiome 7 (1), 1-14, 2019
|Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes|
L Li, A Dechesne, JS Madsen, J Nesme, SJ Sřrensen, BF Smets
The ISME journal 14 (5), 1170-1181, 2020
|Construction of simplified microbial consortia to degrade recalcitrant materials based on enrichment and dilution-to-extinction cultures|
D Kang, S Jacquiod, J Herschend, S Wei, J Nesme, SJ Sřrensen
Frontiers in microbiology 10, 3010, 2020
|Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles|
A Meisner, BL Snoek, J Nesme, E Dent, S Jacquiod, AT Classen, ...
The ISME journal 15 (4), 1207-1221, 2021
|Changes induced by heavy metals in the plant-associated microbiome of Miscanthus x giganteus|
U Zadel, J Nesme, B Michalke, G Vestergaard, GA Płaza, P Schröder, ...
Science of the Total Environment 711, 134433, 2020
|Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms|
D Kang, Y Huang, J Nesme, J Herschend, S Jacquiod, W Kot, LH Hansen, ...
Science of The Total Environment 761, 143281, 2021
|Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli|
M Anjum, JS Madsen, J Nesme, B Jana, M Wiese, D Jasinskytė, ...
Antimicrobial agents and chemotherapy 63 (5), e02528-18, 2019
|Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiome dysbiosis|
A Balbín-Suárez, S Jacquiod, AD Rohr, B Liu, H Flachowsky, ...
FEMS Microbiology Ecology 97 (4), fiab031, 2021
|Rhizosphere microbial communities associated to rose replant disease: links to plant growth and root metabolites|
B Yim, A Baumann, G Grunewaldt-Stöcker, B Liu, L Beerhues, S Zühlke, ...
Horticulture research 7, 2020
|Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms|
J Schierstaedt, S Jechalke, J Nesme, K Neuhaus, SJ Sřrensen, R Grosch, ...
Environmental Microbiology 22 (7), 2639-2652, 2020
|CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids|
R Pinilla-Redondo, J Russel, D Mayo-Muńoz, SA Shah, RA Garrett, ...
Nucleic acids research 50 (8), 4315-4328, 2022
|Improvement of pesticide removal in contaminated media using aqueous extracts from contaminated biopurification systems|
IA Romero, P Van Dillewijn, J Nesme, SJ Sřrensen, E Romero
Science of the Total Environment 691, 749-759, 2019
|Kin discrimination promotes horizontal gene transfer between unrelated strains in Bacillus subtilis|
P Stefanic, K Belcijan, B Kraigher, R Kostanjšek, J Nesme, JS Madsen, ...
Nature communications 12 (1), 1-11, 2021
|Identification of beneficial microbial consortia and bioactive compounds with potential as plant biostimulants for a sustainable agriculture|
S Tabacchioni, S Passato, P Ambrosino, L Huang, M Caldara, C Cantale, ...
Microorganisms 9 (2), 426, 2021