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Joseph (Joey) Davis
Joseph (Joey) Davis
Associate Professor | Department of Biology | MIT
Adresse e-mail validée de mit.edu - Page d'accueil
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Addressing preferred specimen orientation in single-particle cryo-EM through tilting
YZ Tan, PR Baldwin, JH Davis, JR Williamson, CS Potter, B Carragher, ...
Nature methods 14 (8), 793-796, 2017
7192017
Measuring the activity of BioBrick promoters using an in vivo reference standard
JR Kelly, AJ Rubin, JH Davis, CM Ajo-Franklin, J Cumbers, MJ Czar, ...
Journal of biological engineering 3, 1-13, 2009
4912009
Design, construction and characterization of a set of insulated bacterial promoters
JH Davis, AJ Rubin, RT Sauer
Nucleic acids research 39 (3), 1131-1141, 2010
4152010
CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks
ED Zhong, T Bepler, B Berger, JH Davis
Nature Methods 18 (2), 176-185, 2021
3762021
Modular Assembly of the Bacterial Large Ribosomal Subunit
JH Davis, YZ Tan, B Carragher, CS Potter, D Lyumkis, JR Williamson
Cell 167 (6), 1610-1622. e15, 2016
2022016
Structure and dynamics of bacterial ribosome biogenesis
JH Davis, JR Williamson
Philosophical Transactions of the Royal Society B: Biological Sciences 372 …, 2017
1292017
Nitric oxide binding to prokaryotic homologs of the soluble guanylate cyclase β1 H-NOX domain
EM Boon, JH Davis, R Tran, DS Karow, SH Huang, D Pan, ...
Journal of Biological Chemistry 281 (31), 21892-21902, 2006
1052006
Reconstructing continuous distributions of 3D protein structure from cryo-EM images
ED Zhong, T Bepler, JH Davis, B Berger
arXiv preprint arXiv:1909.05215, 2019
972019
Characterization of functional heme domains from soluble guanylate cyclase
DS Karow, D Pan, JH Davis, S Behrends, RA Mathies, MA Marletta
Biochemistry 44 (49), 16266-16274, 2005
962005
Discovery of a small molecule that inhibits bacterial ribosome biogenesis
JM Stokes, JH Davis, CS Mangat, JR Williamson, ED Brown
Elife 3, e03574, 2014
842014
Structures of radial spokes and associated complexes important for ciliary motility
M Gui, M Ma, E Sze-Tu, X Wang, F Koh, ED Zhong, B Berger, JH Davis, ...
Nature structural & molecular biology 28 (1), 29-37, 2021
802021
Functional domains of the 50S subunit mature late in the assembly process
A Jomaa, N Jain, JH Davis, JR Williamson, RA Britton, J Ortega
Nucleic Acids Research 42 (5), 3419-3435, 2014
772014
Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry
SS Chen, E Sperling, JM Silverman, JH Davis, J Williamson
Molecular BioSystems, 2012
692012
Single-molecule denaturation and degradation of proteins by the AAA+ ClpXP protease
Y Shin, JH Davis, RR Brau, A Martin, JA Kenniston, TA Baker, RT Sauer, ...
Proceedings of the National Academy of Sciences 106 (46), 19340-19345, 2009
582009
YphC and YsxC GTPases assist the maturation of the central protuberance, GTPase associated region and functional core of the 50S ribosomal subunit
X Ni, JH Davis, N Jain, A Razi, S Benlekbir, AG McArthur, JL Rubinstein, ...
Nucleic Acids Research 44 (17), 8442-8455, 2016
522016
CryoDRGN2: Ab Initio Neural Reconstruction of 3D Protein Structures From Real Cryo-EM Images
ED Zhong, A Lerer, JH Davis, B Berger
Proceedings of the IEEE/CVF International Conference on Computer Vision …, 2021
492021
Small-molecule control of protein degradation using split adaptors
JH Davis, TA Baker, RT Sauer
ACS chemical biology 6 (11), 1205-1213, 2011
482011
Methods and molecules for yield improvement involving metabolic engineering
JC Way, JH Davis
US Patent 10,385,367, 2019
462019
Binding properties of YjeQ (RsgA), RbfA, RimM and Era to assembly intermediates of the 30S subunit
B Thurlow, JH Davis, V Leong, TF Moraes, JR Williamson, J Ortega
Nucleic acids research 44 (20), 9918-9932, 2016
442016
Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN
LF Kinman, BM Powell, ED Zhong, B Berger, JH Davis
Nature Protocols 18 (2), 319-339, 2023
422023
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