Bernd Fischer

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Joachim M. BuhmannETH ZurichVerified email at inf.ethz.ch
Wolfgang HuberEMBL - European Molecular Biology LaboratoryVerified email at embl.de
Volker RothProfessor of Computer Science, University of BaselVerified email at unibas.ch
Thomas PreissProfessor of RNA Biology, John Curtin School of Medical Research, Australian National UniversityVerified email at anu.edu.au
Lars SteinmetzEMBL / Stanford UniversityVerified email at embl.de
Jonas GrossmannSenior Proteome Informatic Expert, ETH Zurich, University of ZurichVerified email at fgcz.ethz.ch
Michael BoutrosGerman Cancer Research Center (DKFZ) and Heidelberg UniversityVerified email at dkfz.de
Christian K. FreseBayerVerified email at bayer.com
Thomas SandmannComputational biologist, Denali Therapeutics, South San Francisco, USAVerified email at dnli.com
Tomaž CurkUniversity of Ljubljana, Faculty of Computer and Information ScienceVerified email at fri.uni-lj.si
David T HumphreysResearch Scientist, BioinformaticianVerified email at victorchang.edu.au
Norman E. DaveyInstitute Of Cancer Research, LondonVerified email at icr.ac.uk
Franz F. RoosBiostatistician, DSM Nutritional ProductsVerified email at dsm.com
Julian GehringIlluminaVerified email at illumina.com
Pietro ScaturroGroup Leader, Systems Arbovirology, Leibniz Institute of Virology, Hamburg, GermanyVerified email at leibniz-liv.de
Thomas SchwarzlEMBLVerified email at schwarzl.net
Thomas WalterResearcher, Mines ParisTech and Institut CurieVerified email at mines-paristech.fr
Jan EllenbergHead of Unit & Senior Scientist, Cell Biology & Biophysics Unit, EMBLVerified email at embl.de
Michael MacCossProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Jimmy K. EngUniversity of WashingtonVerified email at uw.edu

Bernd Fischer

DKFZ - German Cancer Research Center

Verified email at dkfz.de - Homepage

Biostatistics Computational Biology Genomics Mass Spectrometry


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A cross-platform toolkit for mass spectrometry and proteomics MC Chambers, B Maclean, R Burke, D Amodei, DL Ruderman, ... Nature Biotechnology 30 (10), 918-920, 2012	2596	2012
Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins A Castello, B Fischer, K Eichelbaum, R Horos, BM Beckmann, C Strein, ... Cell 149 (6), 1393–1406, 2012	1954	2012
Comprehensive identification of RNA-binding domains in human cells A Castello, B Fischer, CK Frese, R Horos, AM Alleaume, S Foehr, T Curk, ... Molecular Cell 63 (4), 696-710, 2016	507	2016
The RNA-binding protein repertoire of embryonic stem cells SC Kwon, H Yi, K Eichelbaum, S Föhr, B Fischer, KT You, A Castello, ... Nature structural & molecular biology 20 (9), 1122-1130, 2013	475	2013
The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs BM Beckmann, R Horos, B Fischer, A Castello, K Eichelbaum, ... Nature Communications 6, 2015	410	2015
CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging M Held, MHA Schmitz, B Fischer, T Walter, B Neumann, MH Olma, ... Nature methods 7 (9), 747-754, 2010	398	2010
SomaticSignatures: inferring mutational signatures from single-nucleotide variants JS Gehring, B Fischer, M Lawrence, W Huber Bioinformatics 31 (22), 3673-3675, 2015	294	2015
Path-based clustering for grouping of smooth curves and texture segmentation B Fischer, JM Buhmann IEEE Transactions on Pattern Analysis and Machine Intelligence 25 (4), 513-518, 2003	285	2003
Bagging for path-based clustering B Fischer, JM Buhmann IEEE Transactions on Pattern Analysis and Machine Intelligence 25 (11), 1411 …, 2003	277	2003
A fast SEQUEST cross correlation algorithm JK Eng, B Fischer, J Grossmann, MJ MacCoss Journal of proteome research 7 (10), 4598-4602, 2008	266	2008
RNA-binding proteins in Mendelian disease A Castello, B Fischer, MW Hentze, T Preiss Trends in Genetics 29 (5), 318-327, 2013	256	2013
The group-lasso for generalized linear models: uniqueness of solutions and efficient algorithms V Roth, B Fischer Proceedings of the 25th international conference on Machine learning, 848-855, 2008	240	2008
Dengue Virus Perturbs Mitochondrial Morphodynamics to Dampen Innate Immune Responses L Chatel-Chaix, M Cortese, I Romero-Brey, S Bender, CJ Neufeldt, ... Cell Host & Microbe 20 (3), 342-356, 2016	222	2016
NovoHMM: a hidden Markov model for de novo peptide sequencing B Fischer, V Roth, F Roos, J Grossmann, S Baginsky, P Widmayer, ... Analytical chemistry 77 (22), 7265-7273, 2005	214	2005
System-wide identification of RNA-binding proteins by interactome capture A Castello, R Horos, C Strein, B Fischer, K Eichelbaum, LM Steinmetz, ... Nature protocols 8 (3), 491-500, 2013	212	2013
Mapping of signaling networks through synthetic genetic interaction analysis by RNAi T Horn, T Sandmann, B Fischer, E Axelsson, W Huber, M Boutros Nature methods 8 (4), 341-346, 2011	202	2011
Protein quality control at the inner nuclear membrane A Khmelinskii, E Blaszczak, M Pantazopoulou, B Fischer, DJ Omnus, ... Nature 516 (7531), 410-413, 2014	191	2014
Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping C Laufer, B Fischer, M Billmann, W Huber, M Boutros Nature methods 10 (5), 427-431, 2013	143	2013
Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila VO Sysoev, B Fischer, CK Frese, I Gupta, J Krijgsveld, MW Hentze, ... Nature Communications 7, 2016	139	2016
Gene expression regulatory networks in Trypanosoma brucei: Insights into the role of the mRNA-binding proteome. S Lueong, C Merce, B Fischer, JD Hoheisel, ED Erben Molecular microbiology, 2016	121	2016

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